Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_928

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_927: 9295 - KOG1611 Predicted short chain-type dehydrogenase, at 2211766 to 2213032 9295 mRNA_928: 9296 - Hypothetical Protein, at 2213301 to 2214624 9296 mRNA_929: 9297 - HMMPfam-Protein of unknown function (DUF2419)-PF10343, at 2215057 to 2216039 9297

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,212,309 + 9295 mRNA_927 0.43 1.0
2,212,330 + 9295 mRNA_927 0.45 2.4
2,212,333 - 9295 mRNA_927 0.45 1.4
2,212,333 - 9295 mRNA_927 0.45 1.2
2,212,365 - 9295 mRNA_927 0.47 -0.3
2,212,368 + 9295 mRNA_927 0.48 -0.0
2,212,489 + 9295 mRNA_927 0.57 -0.2
2,212,492 + 9295 mRNA_927 0.57 -0.2
2,212,494 + 9295 mRNA_927 0.57 -1.6
2,212,514 - 9295 mRNA_927 0.59 1.1
2,212,531 - 9295 mRNA_927 0.60 0.3
2,212,604 - 9295 mRNA_927 0.66 0.4
2,212,611 + 9295 mRNA_927 0.67 0.8
2,212,617 - 9295 mRNA_927 0.67 -0.9
2,212,637 + 9295 mRNA_927 0.69 -0.1
2,212,640 - 9295 mRNA_927 0.69 0.6
2,212,659 - 9295 mRNA_927 0.70 0.1
2,212,669 + 9295 mRNA_927 0.71 0.7
2,212,755 - 9295 mRNA_927 0.78 -0.4
2,212,834 - 9295 mRNA_927 0.84 1.0
2,212,912 - -0.6
2,212,951 - -1.2
2,212,957 + -0.9
2,213,037 - 1.5
2,213,066 - -1.4
2,213,082 - -1.2
2,213,102 - -0.9
2,213,115 + -0.4
2,213,122 + 0.5
2,213,221 - -2.1
2,213,230 + 0.4
2,213,236 - 0.3
2,213,240 + -0.3
2,213,242 - 0.0
2,213,243 + -1.4
2,213,257 + -1.0
2,213,381 + -1.4
2,213,387 + -0.8
2,213,388 - -1.9
2,213,390 + -0.4
2,213,390 - -1.4
2,213,393 - 0.0
2,213,399 - -0.2
2,213,412 - -1.5
2,213,414 + 0.0
2,213,477 - 9296 mRNA_928 0.13 -1.4
2,213,555 - 9296 mRNA_928 0.19 0.1
2,213,558 + 9296 mRNA_928 0.19 -0.8
2,213,585 - 9296 mRNA_928 0.21 -0.5
2,213,671 + 9296 mRNA_928 0.28 -1.5
2,213,699 - 9296 mRNA_928 0.30 -0.9
2,213,703 - 9296 mRNA_928 0.30 -1.0
2,213,709 - 9296 mRNA_928 0.31 -1.1
2,213,731 + 9296 mRNA_928 0.32 -1.2
2,213,764 - 9296 mRNA_928 0.35 -0.8
2,213,832 - 9296 mRNA_928 0.40 -0.6
2,213,855 + 9296 mRNA_928 0.42 -0.9
2,213,860 + 9296 mRNA_928 0.42 -0.5
2,213,863 - 9296 mRNA_928 0.42 -1.4
2,213,991 - 9296 mRNA_928 0.52 -0.5
2,214,012 - 9296 mRNA_928 0.54 -0.0
2,214,242 + 9296 mRNA_928 0.71 -1.7
2,214,246 - 9296 mRNA_928 0.71 -0.7
2,214,281 - 9296 mRNA_928 0.74 -0.9
2,214,387 - 9296 mRNA_928 0.82 -0.5
2,214,418 - 9296 mRNA_928 0.84 -0.9
2,214,491 - 9296 mRNA_928 0.90 -2.4
2,214,558 - -1.5
2,214,563 - 1.7
2,214,570 + -0.7
2,214,701 - -0.3
2,214,754 - -0.3
2,214,812 - -0.4
2,214,970 + -0.9
2,214,981 - 0.2
2,215,011 + 0.2
2,215,128 + 0.8
2,215,141 - 0.1
2,215,144 - 0.4
2,215,151 - 1.3
2,215,168 - 9297 mRNA_929 0.11 1.0
2,215,282 - 9297 mRNA_929 0.23 -0.4
2,215,291 - 9297 mRNA_929 0.24 0.7
2,215,376 - 9297 mRNA_929 0.32 -0.3
2,215,415 - 9297 mRNA_929 0.36 1.2
2,215,437 - 9297 mRNA_929 0.39 1.0
2,215,457 - 9297 mRNA_929 0.41 -0.0
2,215,478 + 9297 mRNA_929 0.43 -0.5
2,215,514 - 9297 mRNA_929 0.46 1.2
2,215,558 - 9297 mRNA_929 0.51 -0.1
2,215,569 - 9297 mRNA_929 0.52 -0.0
2,215,580 - 9297 mRNA_929 0.53 -0.9
2,215,588 - 9297 mRNA_929 0.54 0.7
2,215,594 + 9297 mRNA_929 0.55 0.6
2,215,597 + 9297 mRNA_929 0.55 1.3
2,215,601 - 9297 mRNA_929 0.55 -0.5
2,215,603 - 9297 mRNA_929 0.56 -1.3