Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_823

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_822: 9190 - HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729, at 1965379 to 1971450 9190 mRNA_823: 9191 - HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217, at 1971584 to 1974293 9191 mRNA_824: 9192 - Hypothetical Protein, at 1974667 to 1975574 9192

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,970,946 - 1.2
1,971,236 - -0.7
1,971,385 + -0.5
1,971,535 - 3.0
1,971,795 - 1.7
1,971,829 + 1.7
1,971,829 + -1.4
1,971,834 + 2.1
1,972,246 + 9191 mRNA_823 0.24 1.0
1,972,428 + 9191 mRNA_823 0.31 2.0
1,972,567 + 9191 mRNA_823 0.36 1.7
1,972,862 - 9191 mRNA_823 0.47 0.9
1,972,866 + 9191 mRNA_823 0.47 0.5
1,972,870 + 9191 mRNA_823 0.47 1.6
1,972,991 - 9191 mRNA_823 0.52 -1.1
1,973,143 + 9191 mRNA_823 0.58 1.1
1,973,302 - 9191 mRNA_823 0.63 -0.6
1,973,374 - 9191 mRNA_823 0.66 2.0
1,973,444 + 9191 mRNA_823 0.69 1.6
1,973,719 - 9191 mRNA_823 0.79 0.9
1,974,203 - -0.2
1,974,294 - -0.1
1,974,457 + 0.1
1,975,027 - 9192 mRNA_824 0.40 0.4
1,975,054 + 9192 mRNA_824 0.43 0.8