Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_813

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_812: 9180 - K00474 TMLHE trimethyllysine dioxygenase, at 1932438 to 1934306 9180 mRNA_813: 9181 - KOG1515 Arylacetamide deacetylase, at 1934568 to 1937031 9181 mRNA_814: 9182 - K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19, at 1937554 to 1941739 9182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,934,341 + -0.2
1,934,447 - -0.3
1,934,614 + 0.9
1,935,085 - 9181 mRNA_813 0.21 0.2
1,935,327 - 9181 mRNA_813 0.31 -0.0
1,935,490 - 9181 mRNA_813 0.37 2.0
1,935,647 - 9181 mRNA_813 0.44 0.0
1,936,065 + 9181 mRNA_813 0.61 1.2
1,936,226 - 9181 mRNA_813 0.67 1.4
1,936,509 + 9181 mRNA_813 0.79 -0.6
1,936,623 - 9181 mRNA_813 0.83 0.7
1,936,632 + 9181 mRNA_813 0.84 -0.0
1,936,651 - 9181 mRNA_813 0.85 0.2
1,936,689 + 9181 mRNA_813 0.86 -0.9
1,936,700 + 9181 mRNA_813 0.87 -0.0
1,936,701 - 9181 mRNA_813 0.87 -0.1
1,936,806 + -0.3
1,936,954 - 1.2
1,936,994 - -0.5
1,937,086 - 1.2
1,937,095 - -0.8
1,937,106 + -1.0
1,937,113 - 0.5
1,937,115 + 0.1
1,937,147 - 0.9
1,937,160 + -0.4
1,937,210 + 2.4
1,937,293 - -2.0
1,937,301 - -0.0
1,937,305 + 2.0
1,937,308 + -0.1
1,937,311 - 1.4
1,937,342 - 0.5
1,937,351 + 1.5
1,937,371 - 0.6
1,937,419 - 0.1
1,937,421 - -0.4
1,937,427 + -1.4