Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_746

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_745: 9113 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 1780451 to 1782779 9113 mRNA_746: 9114 - KOG0143 Iron/ascorbate family oxidoreductases, at 1783112 to 1784758 9114 mRNA_747: 9115 - K02737 PSMB5 20S proteasome subunit beta 5, at 1784917 to 1786577 9115

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,782,119 + 9113 mRNA_745 0.72 -0.3
1,782,273 + 9113 mRNA_745 0.78 0.2
1,782,551 - -0.3
1,782,555 + 2.1
1,782,559 - -0.0
1,782,568 + 0.0
1,782,578 + 0.1
1,782,579 - 0.4
1,782,580 - 0.4
1,782,585 - -0.3
1,782,592 + -0.2
1,782,680 - 1.0
1,782,864 + 1.2
1,782,865 + 0.6
1,782,866 + 0.5
1,782,871 - 0.1
1,782,877 - -0.4
1,782,885 + -0.4
1,782,887 - 0.8
1,782,893 + -0.4
1,782,917 - 0.9
1,782,948 + 0.3
1,783,188 + 1.6
1,783,191 - 1.5
1,783,197 + -0.3
1,783,305 + 9114 mRNA_746 0.12 -0.6
1,783,314 + 9114 mRNA_746 0.12 0.3
1,783,317 + 9114 mRNA_746 0.12 0.5
1,783,340 - 9114 mRNA_746 0.14 1.0
1,783,349 - 9114 mRNA_746 0.14 2.1
1,783,661 - 9114 mRNA_746 0.33 1.9
1,784,346 + 9114 mRNA_746 0.75 -0.0
1,784,582 + 9114 mRNA_746 0.89 1.0
1,784,944 - 0.0