Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_687

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1645014 to 1645916 9054 mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1646516 to 1647919 9055 mRNA_688: 9056 - Hypothetical Protein, at 1648310 to 1648900 9056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,645,577 + 9054 mRNA_686 0.62 -0.1
1,645,703 - 9054 mRNA_686 0.76 0.2
1,645,869 + 0.0
1,645,992 - 0.7
1,645,993 + -0.3
1,645,995 - 0.3
1,645,995 - -0.3
1,646,004 - 1.5
1,646,009 - 1.1
1,646,015 - -0.0
1,646,018 + 0.1
1,646,024 + 0.8
1,646,024 + 0.9
1,646,033 - 1.0
1,646,150 - 0.7
1,646,154 - 0.1
1,646,438 + -1.1
1,646,455 - -0.1
1,646,461 + -0.4
1,646,871 - 9055 mRNA_687 0.25 0.2
1,646,889 + 9055 mRNA_687 0.27 -0.7
1,647,325 + 9055 mRNA_687 0.58 0.1
1,647,766 + 9055 mRNA_687 0.89 -0.3
1,647,960 + -0.2
1,648,654 + 9056 mRNA_688 0.58 0.1
1,648,675 + 9056 mRNA_688 0.62 3.3
1,648,681 + 9056 mRNA_688 0.63 -0.5