Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_659

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_658: 9026 - K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46, at 1582367 to 1585803 9026 mRNA_659: 9027 - Hypothetical Protein, at 1586491 to 1589993 9027 mRNA_660: 9028 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 1590128 to 1592290 9028

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,585,591 - -1.2
1,585,600 + -1.0
1,585,609 + -1.8
1,585,617 + -0.5
1,585,617 - -1.4
1,585,623 - 0.0
1,585,650 + -0.9
1,585,738 + 0.6
1,585,743 - -3.0
1,585,751 - 1.6
1,585,762 + 2.0
1,585,779 - 0.9
1,585,881 - 0.7
1,585,897 + 0.5
1,585,912 - 0.7
1,586,005 + -0.5
1,586,047 + 0.9
1,586,068 - 0.9
1,586,089 + -0.1
1,586,172 - 1.7
1,586,220 - -1.1
1,586,708 - 1.7
1,587,222 + 9027 mRNA_659 0.21 -0.1
1,587,237 + 9027 mRNA_659 0.21 -1.8
1,587,516 + 9027 mRNA_659 0.29 1.1
1,587,820 + 9027 mRNA_659 0.38 -0.4
1,588,543 - 9027 mRNA_659 0.59 1.5
1,588,928 - 9027 mRNA_659 0.70 1.2
1,589,118 - 9027 mRNA_659 0.75 0.0
1,589,397 - 9027 mRNA_659 0.83 -1.0
1,589,413 + 9027 mRNA_659 0.83 -0.5
1,589,660 - 2.6
1,590,018 - 1.7
1,590,035 - -0.4
1,590,042 + 2.2
1,590,044 + 0.2
1,590,176 + 1.7
1,590,185 - 1.0
1,590,203 - -0.2
1,590,342 - -0.5
1,590,343 + 2.2
1,590,344 + 0.8
1,590,348 - 9028 mRNA_660 0.10 1.3
1,590,386 + 9028 mRNA_660 0.12 -0.0
1,590,386 + 9028 mRNA_660 0.12 -0.1
1,590,486 - 9028 mRNA_660 0.17 -1.2