Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_626

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_625: 8993 - K13162 PCBP2_3_4 poly(rC)-binding protein 2/3/4, at 1498815 to 1500137 8993 mRNA_626: 8994 - K19423 epsE glycosyltransferase EpsE, at 1500844 to 1503706 8994 mRNA_627: 8995 - HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1504190 to 1505264 8995

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,500,250 - -0.3
1,500,267 + -0.4
1,500,422 + 1.5
1,500,562 + -0.7
1,500,591 + -0.3
1,500,633 + -0.3
1,500,635 - 1.2
1,500,640 + 2.1
1,500,644 - 2.2
1,500,924 + 0.3
1,501,370 + 8994 mRNA_626 0.18 0.5
1,501,705 + 8994 mRNA_626 0.30 1.0
1,502,073 + 8994 mRNA_626 0.43 -0.9
1,502,225 - 8994 mRNA_626 0.48 -1.7
1,502,232 + 8994 mRNA_626 0.48 -0.9
1,502,240 - 8994 mRNA_626 0.49 0.9
1,502,388 - 8994 mRNA_626 0.54 -0.0
1,502,538 + 8994 mRNA_626 0.59 2.0
1,502,695 + 8994 mRNA_626 0.65 -0.6
1,502,817 + 8994 mRNA_626 0.69 -0.0
1,502,856 + 8994 mRNA_626 0.70 -0.2
1,503,116 - 8994 mRNA_626 0.79 -0.5
1,503,262 + 8994 mRNA_626 0.84 0.2
1,503,693 - 0.2
1,503,704 + 0.8
1,503,843 + -0.4
1,503,873 - -0.1
1,504,008 - 1.2
1,504,015 - 0.3
1,504,160 + 0.8
1,504,187 - -0.5
1,504,188 + -0.1
1,504,490 + 8995 mRNA_627 0.28 0.3
1,504,687 + 8995 mRNA_627 0.46 1.5