Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_618

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_617: 8985 - Hypothetical Protein, at 1482185 to 1482679 8985 mRNA_618: 8986 - HMMPfam-PX domain-PF00787,ProSiteProfiles-PX domain profile.-PS50195,SUPERFAMILY--SSF64268, at 1482898 to 1485797 8986 mRNA_619: 8987 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1486682 to 1488921 8987

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,482,015 + 1.1
1,482,026 + 0.5
1,482,031 - 0.6
1,482,050 + 1.8
1,482,059 + -0.2
1,482,060 - 0.5
1,482,176 - -0.2
1,482,188 + 0.7
1,482,194 - 0.5
1,482,200 + 0.4
1,482,203 - 0.2
1,482,205 + 0.7
1,482,352 - 8985 mRNA_617 0.34 0.5
1,482,353 - 8985 mRNA_617 0.34 1.3
1,482,358 + 8985 mRNA_617 0.35 -0.7
1,482,363 + 8985 mRNA_617 0.36 -0.9
1,482,499 - 8985 mRNA_617 0.63 -0.9
1,482,502 + 8985 mRNA_617 0.64 0.1
1,482,521 + 8985 mRNA_617 0.68 1.3
1,482,523 + 8985 mRNA_617 0.68 1.0
1,482,936 - -1.2
1,483,385 - 8986 mRNA_618 0.17 0.4
1,483,522 + 8986 mRNA_618 0.22 -0.2
1,483,773 - 8986 mRNA_618 0.30 -0.3
1,483,830 + 8986 mRNA_618 0.32 -0.9
1,483,832 - 8986 mRNA_618 0.32 -0.3
1,484,076 + 8986 mRNA_618 0.41 0.6
1,484,713 - 8986 mRNA_618 0.63 0.4
1,484,781 - 8986 mRNA_618 0.65 2.1
1,485,182 + 8986 mRNA_618 0.79 0.1
1,485,214 + 8986 mRNA_618 0.80 -0.4
1,485,780 + 0.7
1,485,784 + 1.6
1,485,889 - 1.0
1,485,920 + 0.4
1,485,925 - 0.8
1,485,937 + -0.4
1,486,062 + 0.9
1,486,075 - -0.3
1,486,097 + -0.6
1,486,115 - -0.2
1,486,116 + 0.1
1,486,116 + 2.7
1,486,117 + 0.9
1,486,117 - -0.4
1,486,117 + 0.6
1,486,125 - 0.3
1,486,138 - 0.3
1,486,146 - 1.4
1,486,149 - -0.3
1,486,150 + 1.0
1,486,151 - -0.9
1,486,152 + 0.6
1,486,152 + 0.0
1,486,173 - -0.1
1,486,177 - 0.5
1,486,183 - 0.5
1,486,189 - 0.9
1,486,192 - 0.7
1,486,194 - 0.1
1,486,197 + 0.2
1,486,200 + 0.8
1,486,202 + -0.7
1,486,224 - -0.2
1,486,236 - -0.1
1,486,241 + 0.8
1,486,256 - 0.0
1,486,259 - 0.1
1,486,274 - 1.2
1,486,275 + -0.8
1,486,276 + -0.1
1,486,279 + 0.4
1,486,279 + 0.8
1,486,280 - -0.2
1,486,283 + 0.3
1,486,286 - 0.1
1,486,291 + 1.0
1,486,295 + 1.6
1,486,297 + 0.9
1,486,303 - 0.8
1,486,328 - 0.7
1,486,331 - 0.9
1,486,337 - 0.4
1,486,337 + 0.9
1,486,337 + 0.2
1,486,362 - 0.5
1,486,364 + 0.8
1,486,374 - -0.4
1,486,375 - 0.3
1,486,383 + 0.1
1,486,385 - 0.4
1,486,385 - 3.3
1,486,395 + -0.9
1,486,664 - 2.0
1,486,664 + 0.6