Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_587

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1398655 to 1401525 8954 mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1401874 to 1405590 8955 mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1406393 to 1408614 8956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,401,174 + 8954 mRNA_586 0.88 -0.2
1,401,918 - -0.1
1,401,997 + 1.6
1,402,056 + -0.5
1,402,075 + -1.0
1,402,517 + 8955 mRNA_587 0.17 -0.2
1,402,609 + 8955 mRNA_587 0.20 0.8
1,402,885 - 8955 mRNA_587 0.27 -1.2
1,402,963 + 8955 mRNA_587 0.29 -0.4
1,403,092 - 8955 mRNA_587 0.33 0.7
1,403,145 + 8955 mRNA_587 0.34 2.1
1,403,261 + 8955 mRNA_587 0.37 1.2
1,403,619 - 8955 mRNA_587 0.47 0.4
1,404,820 + 8955 mRNA_587 0.79 0.0
1,404,848 + 8955 mRNA_587 0.80 0.4
1,405,113 + 8955 mRNA_587 0.87 -0.6
1,405,280 + -2.0
1,405,584 - 2.4
1,405,596 - 0.3
1,406,318 + 0.3
1,406,337 + 2.4
1,406,459 - 1.4
1,406,477 - -0.0
1,406,487 + 0.1