Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_569

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_568: 8936 - K14454 GOT1 aspartate aminotransferase, cytoplasmic, at 1359627 to 1361515 8936 mRNA_569: 8937 - K07059 K07059 uncharacterized protein, at 1362223 to 1362868 8937 mRNA_570: 8938 - Hypothetical Protein, at 1363774 to 1366185 8938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,361,261 + 8936 mRNA_568 0.87 0.1
1,361,263 - 8936 mRNA_568 0.87 -1.7
1,361,264 - 8936 mRNA_568 0.87 -0.2
1,361,572 - -0.0
1,361,576 + 2.5
1,361,590 + 0.3
1,361,740 - -0.4
1,361,744 + 1.0
1,361,751 - 0.2
1,361,751 - -1.1
1,361,753 + -0.3
1,361,762 + 1.5
1,361,775 - 0.8
1,361,787 + -0.9
1,361,787 + -1.7
1,361,795 - 1.1
1,361,797 - -1.4
1,361,799 - 1.3
1,361,811 + -0.3
1,361,818 - 1.7
1,361,985 + -0.2
1,362,217 - 0.1
1,362,230 - -0.0
1,362,231 + 2.3
1,362,242 - 1.2
1,362,243 + 0.5
1,362,343 + 8937 mRNA_569 0.19 -0.1
1,362,350 + 8937 mRNA_569 0.20 0.5
1,362,400 + 8937 mRNA_569 0.27 2.3
1,362,935 - 1.0
1,362,948 + 1.1
1,362,973 + 1.6
1,363,106 - 0.1
1,363,123 + -0.9
1,363,125 - -1.2
1,363,250 + 0.0
1,363,255 + 1.1
1,363,257 - 3.1
1,363,288 - 1.2
1,363,390 + -0.6
1,363,421 - 0.1
1,363,422 + -1.5
1,363,428 + -0.5
1,363,436 + 0.1
1,363,437 + 1.0
1,363,438 + 0.1
1,363,439 + -0.2
1,363,440 - -0.6
1,363,726 - -0.6
1,363,729 + -0.2
1,363,735 - 2.6