Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_452

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1050947 to 1052587 8819 mRNA_452: 8820 - SUPERFAMILY--SSF52047, at 1053191 to 1054789 8820 mRNA_453: 8821 - SUPERFAMILY--SSF52047, at 1055222 to 1056818 8821

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,052,286 + 8819 mRNA_451 0.82 0.2
1,052,300 - 8819 mRNA_451 0.82 0.1
1,052,306 - 8819 mRNA_451 0.83 0.3
1,052,574 - 0.8
1,052,574 - 0.1
1,053,005 - 1.1
1,053,295 - -0.0
1,053,472 + 8820 mRNA_452 0.18 -1.0
1,053,513 - 8820 mRNA_452 0.20 1.1
1,053,580 - 8820 mRNA_452 0.24 0.9
1,054,029 - 8820 mRNA_452 0.52 -1.2
1,054,039 + 8820 mRNA_452 0.53 1.7
1,054,209 + 8820 mRNA_452 0.64 -0.4
1,054,218 + 8820 mRNA_452 0.64 1.0
1,054,347 - 8820 mRNA_452 0.72 1.5
1,054,365 - 8820 mRNA_452 0.73 0.3
1,054,475 - 8820 mRNA_452 0.80 0.8
1,054,486 - 8820 mRNA_452 0.81 -1.1
1,054,487 + 8820 mRNA_452 0.81 -0.3
1,054,536 - 8820 mRNA_452 0.84 1.5
1,054,621 - 8820 mRNA_452 0.89 0.9
1,054,636 - 0.6
1,054,705 - -0.0
1,054,708 + -0.1
1,054,720 - 1.6
1,054,728 - 0.2
1,054,730 - -0.9
1,054,796 - 0.1
1,054,800 - -0.1
1,054,805 + 0.6
1,054,808 + 0.1
1,054,823 - -0.1
1,054,824 - -1.1
1,054,843 - 0.3
1,054,851 + -0.1
1,054,867 - 1.1
1,054,907 - 0.5
1,054,935 + 0.3
1,054,971 - 0.8
1,055,211 - 0.2
1,055,561 + 8821 mRNA_453 0.21 -1.2
1,055,577 - 8821 mRNA_453 0.22 0.3
1,055,779 + 8821 mRNA_453 0.35 -0.4