Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_368

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850981 to 853734 8735 mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853834 to 856786 8736 mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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853,299 + 8735 mRNA_367 0.84 1.9
853,611 - 0.4
854,038 + -0.2
854,069 + -0.0
854,183 - 8736 mRNA_368 0.12 0.3
854,317 + 8736 mRNA_368 0.16 1.2
854,802 + 8736 mRNA_368 0.33 1.7
854,809 + 8736 mRNA_368 0.33 -0.5
855,079 - 8736 mRNA_368 0.42 -0.0
855,657 - 8736 mRNA_368 0.62 1.5
855,665 - 8736 mRNA_368 0.62 1.0
855,784 - 8736 mRNA_368 0.66 0.1
855,976 - 8736 mRNA_368 0.73 0.7
855,985 + 8736 mRNA_368 0.73 2.2
856,108 - 8736 mRNA_368 0.77 -0.1
856,136 - 8736 mRNA_368 0.78 -0.0
856,522 - 0.1
856,539 + 0.6
856,548 - 0.6
856,554 + -0.4
856,668 - -0.2
856,695 - 1.2
856,775 + 1.1
856,798 - -0.1
856,823 + 0.1
856,823 + -0.7
856,827 + 1.0
856,854 + 0.2
856,954 + 0.6
856,954 + 0.3
856,972 - -0.7
856,977 + 0.2
856,988 + 1.1
856,992 + 0.3
856,992 - 2.3
857,010 - 0.8
857,017 - -0.3
857,029 + 1.0
857,053 - -1.2
857,055 - -0.4
857,072 + 0.5
857,075 - -0.4
857,115 - 1.4
857,131 + -0.1
857,165 + 0.3
857,165 + 0.3
857,170 - 0.1
857,367 + -1.2
857,391 + 1.3
857,683 + 8737 mRNA_369 0.24 -1.0