Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_351

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_350: 8718 - K17439 MRPL35 large subunit ribosomal protein L35, at 819201 to 820840 8718 mRNA_351: 8719 - BLAST carbohydrate-binding module family 13 protein [Rhizoc..., at 821227 to 823466 8719 mRNA_352: 8720 - K14298 RAE1, GLE2 mRNA export factor, at 823972 to 825872 8720

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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820,710 - 0.6
820,725 + 1.1
820,729 - -0.1
820,730 - 0.0
820,750 - 2.0
820,865 + 3.1
820,879 - 0.8
820,894 - -0.2
820,899 - -0.4
820,900 + -0.2
820,925 - 1.6
820,925 - 2.0
820,925 + 0.0
820,951 + 0.8
820,960 - 0.7
820,967 - 0.5
820,973 + 0.8
820,992 + -1.1
820,997 - 0.5
820,998 - 0.0
821,013 + 1.9
821,014 - -1.2
821,017 - 0.0
821,019 - 0.8
821,019 + 0.1
821,048 - -1.1
821,055 - 0.6
821,057 + 0.2
821,064 + -0.4
821,071 + 1.6
821,074 + -0.3
821,075 - 0.2
821,182 - 1.3
821,209 + -0.7
821,211 - 2.0
821,213 - -1.5
821,213 - -1.3
821,215 + -0.0
821,222 + -0.2
821,224 - 1.5
821,225 + 0.7
821,367 + -0.6
821,392 + 0.8
821,401 + 0.4
821,415 + 1.2
821,441 - 0.5
821,442 + 1.8
821,443 - 0.6
821,496 + 8719 mRNA_351 0.12 1.7
821,501 - 8719 mRNA_351 0.12 2.0
821,522 + 8719 mRNA_351 0.13 -0.7
821,568 + 8719 mRNA_351 0.15 -0.2
821,623 - 8719 mRNA_351 0.18 -0.0
821,819 - 8719 mRNA_351 0.26 -0.4
821,958 - 8719 mRNA_351 0.33 -2.3
821,991 - 8719 mRNA_351 0.34 0.6
822,246 + 8719 mRNA_351 0.45 -0.4
822,486 - 8719 mRNA_351 0.56 -0.7
822,520 + 8719 mRNA_351 0.58 0.3
823,502 - 0.3
823,571 - 1.4
823,796 - 0.4
823,838 - 0.6
823,981 - 0.3
823,984 + 1.8