Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_318

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_317: 8685 - HMMPfam-DnaJ domain-PF00226,PRINTS-DnaJ domain signature-PR00625,ProSitePatterns-Nt-dnaJ domain signature.-PS00636,ProSiteProfiles-dnaJ domain profile.-PS50076,ProSiteProfiles-IQ motif profile.-PS50096,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 756228 to 757512 8685 mRNA_318: 8686 - Interpro Fungal domain of unknown function (DUF1750), at 757594 to 759249 8686 mRNA_319: 8687 - KOG2134 Polynucleotide kinase 3' phosphatase, at 759335 to 760537 8687

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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756,641 - 8685 mRNA_317 0.32 -0.5
756,817 + 8685 mRNA_317 0.46 -1.0
756,974 - 8685 mRNA_317 0.58 0.7
757,021 + 8685 mRNA_317 0.62 0.9
757,165 - 8685 mRNA_317 0.73 1.2
757,425 + 0.9
758,983 - 8686 mRNA_318 0.84 -0.6
759,007 - 8686 mRNA_318 0.85 -3.8
759,128 + -0.3
759,281 - -2.7
759,283 - -1.8
759,294 + 0.8
759,424 + 1.1
759,424 - 0.8
759,446 + 0.7
759,591 - 8687 mRNA_319 0.21 0.7
759,593 - 8687 mRNA_319 0.21 -0.1
759,596 + 8687 mRNA_319 0.22 0.6
759,880 - 8687 mRNA_319 0.45 1.1
760,182 - 8687 mRNA_319 0.70 -0.8