Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_311

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_311: 8679 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 737521 to 741046 8679 mRNA_312: 8680 - K20103 DDX60 ATP-dependent RNA helicase DDX60, at 741330 to 747566 8680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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736,621 + 0.3
736,621 - 0.2
736,662 - 0.5
736,747 + 1.2
736,766 + -1.1
736,936 - -0.5
736,988 + 1.9
737,567 - -1.2
737,986 - 8679 mRNA_311 0.13 -1.1
738,594 + 8679 mRNA_311 0.30 -0.4
738,727 - 8679 mRNA_311 0.34 0.0
738,775 - 8679 mRNA_311 0.36 0.2
738,776 + 8679 mRNA_311 0.36 0.0
739,001 + 8679 mRNA_311 0.42 0.1
739,316 - 8679 mRNA_311 0.51 -0.7
739,343 - 8679 mRNA_311 0.52 1.3
739,346 + 8679 mRNA_311 0.52 -1.0
739,478 - 8679 mRNA_311 0.56 1.4
739,615 + 8679 mRNA_311 0.59 -0.6
739,808 + 8679 mRNA_311 0.65 -0.2
740,055 + 8679 mRNA_311 0.72 0.2
740,190 + 8679 mRNA_311 0.76 0.2
740,440 - 8679 mRNA_311 0.83 -0.4
740,467 - 8679 mRNA_311 0.84 0.6
740,595 - 8679 mRNA_311 0.87 -0.9
740,926 - -0.8
740,930 - -0.2
741,064 - 4.0
741,064 - 0.3
741,066 - -0.1
741,067 - -0.2
741,068 - 0.1
741,085 + -1.1
741,325 - -0.1
741,330 - -0.1
741,331 - 1.4
741,342 + 0.6
741,350 - 0.8
741,350 - -0.2
741,352 - 1.5
741,357 + 1.2
741,359 - -0.2
741,361 + 0.7
741,366 + -1.1