Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_268

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640868 to 642235 8635 mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642489 to 643919 8636 mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644049 to 645349 8637

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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641,868 + 8635 mRNA_267 0.73 0.5
642,177 + -0.2
642,303 + 0.3
642,319 - -0.2
642,355 + 0.1
642,419 - 0.1
642,422 + 1.1
642,423 + 1.1
642,427 - -0.5
642,432 + 1.6
642,432 + 2.3
642,581 - -0.1
642,926 + 8636 mRNA_268 0.31 1.4
643,064 + 8636 mRNA_268 0.40 1.2
643,463 - 8636 mRNA_268 0.68 -0.5
643,550 - 8636 mRNA_268 0.74 -0.3
643,627 + 8636 mRNA_268 0.80 0.3
643,687 - 8636 mRNA_268 0.84 0.2
643,854 + 0.9
643,862 + 1.4
644,252 + 8637 mRNA_269 0.16 0.2
644,404 - 8637 mRNA_269 0.27 0.1
644,465 - 8637 mRNA_269 0.32 -1.2
644,485 - 8637 mRNA_269 0.34 1.2
644,714 - 8637 mRNA_269 0.51 0.5
644,871 + 8637 mRNA_269 0.63 0.4