Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_219

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_217: 8585 - K02292 crtO beta-carotene ketolase (CrtO type), at 538550 to 540960 8585 mRNA_218: 8586 - Hypothetical Protein, at 540999 to 541232 8586 mRNA_219: 8587 - Hypothetical Protein, at 541631 to 542423 8587 mRNA_220: 8588 - K11159 K11159 carotenoid cleavage dioxygenase, at 542754 to 544832 8588

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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540,693 - 8585 mRNA_217 0.89 0.1
540,709 + 8585 mRNA_217 0.90 0.7
540,843 - 0.6
540,854 + 0.7
540,891 + -0.1
540,970 + 0.3
540,991 - -1.0
540,992 + 0.2
540,996 + 0.1
540,998 - -0.1
541,021 - 0.1
541,024 + 8586 mRNA_218 0.11 0.4
541,031 + 8586 mRNA_218 0.14 1.9
541,041 + 8586 mRNA_218 0.18 0.0
541,053 + 8586 mRNA_218 0.23 1.2
541,054 + 8586 mRNA_218 0.24 2.3
541,061 - 8586 mRNA_218 0.26 1.0
541,065 - 8586 mRNA_218 0.28 0.9
541,065 - 8586 mRNA_218 0.28 -1.2
541,078 - 8586 mRNA_218 0.34 0.3
541,084 + 8586 mRNA_218 0.36 -0.5
541,113 + 8586 mRNA_218 0.49 0.4
541,127 + 8586 mRNA_218 0.55 1.5
541,165 + 8586 mRNA_218 0.71 -0.4
541,195 - 8586 mRNA_218 0.84 0.8
541,302 - 1.0
541,459 - 3.8
542,096 - 8587 mRNA_219 0.59 -1.1
542,213 - 8587 mRNA_219 0.73 -0.7
542,224 - 8587 mRNA_219 0.75 -1.1
542,525 + 0.4
542,699 + -0.0
543,027 + 8588 mRNA_220 0.13 -0.2
543,117 - 8588 mRNA_220 0.17 -0.5
543,126 + 8588 mRNA_220 0.18 -0.1
543,127 + 8588 mRNA_220 0.18 1.3
543,236 + 8588 mRNA_220 0.23 -1.0
543,421 - 8588 mRNA_220 0.32 0.9