Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_217

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_216: 8584 - BLAST protein of choline transporter-like family [Rhodo..., at 534909 to 538209 8584 mRNA_217: 8585 - K02292 crtO beta-carotene ketolase (CrtO type), at 538550 to 540960 8585 mRNA_218: 8586 - Hypothetical Protein, at 540999 to 541232 8586 mRNA_219: 8587 - Hypothetical Protein, at 541631 to 542423 8587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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537,839 - 8584 mRNA_216 0.89 0.4
537,843 + 8584 mRNA_216 0.89 0.2
537,845 - 8584 mRNA_216 0.89 1.3
537,886 + 0.4
538,098 - 2.0
538,514 + 0.5
538,819 + 8585 mRNA_217 0.11 -0.1
539,117 - 8585 mRNA_217 0.24 0.0
539,416 - 8585 mRNA_217 0.36 2.1
539,548 - 8585 mRNA_217 0.41 -1.6
539,697 + 8585 mRNA_217 0.48 0.5
540,693 - 8585 mRNA_217 0.89 0.1
540,709 + 8585 mRNA_217 0.90 0.7
540,843 - 0.6
540,854 + 0.7
540,891 + -0.1
540,970 + 0.3
540,991 - -1.0
540,992 + 0.2
540,996 + 0.1
540,998 - -0.1
541,021 - 0.1
541,024 + 8586 mRNA_218 0.11 0.4
541,031 + 8586 mRNA_218 0.14 1.9
541,041 + 8586 mRNA_218 0.18 0.0
541,053 + 8586 mRNA_218 0.23 1.2
541,054 + 8586 mRNA_218 0.24 2.3
541,061 - 8586 mRNA_218 0.26 1.0
541,065 - 8586 mRNA_218 0.28 0.9
541,065 - 8586 mRNA_218 0.28 -1.2
541,078 - 8586 mRNA_218 0.34 0.3
541,084 + 8586 mRNA_218 0.36 -0.5
541,113 + 8586 mRNA_218 0.49 0.4
541,127 + 8586 mRNA_218 0.55 1.5
541,165 + 8586 mRNA_218 0.71 -0.4
541,195 - 8586 mRNA_218 0.84 0.8
541,302 - 1.0
541,459 - 3.8