Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_204

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495941 to 499437 8570 mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499764 to 500298 8571 mRNA_204: 8572 - Hypothetical Protein, at 500316 to 500871 8572 mRNA_205: 8573 - KOG4267 Predicted membrane protein, at 501072 to 501667 8573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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499,360 - 0.0
499,369 - -0.1
499,379 + 0.4
499,380 + 0.8
499,382 - -0.2
499,385 + 1.7
499,386 + -0.2
499,500 - -0.4
499,503 + -0.4
499,506 - 0.4
499,516 - 1.1
499,517 - 0.4
499,520 + -0.6
499,523 - -0.6
499,526 + 1.2
499,536 + 1.0
499,538 + 1.8
499,666 - -1.0
499,669 - -0.1
499,813 - -1.0
499,857 + 8571 mRNA_203 0.17 0.3
499,958 + 8571 mRNA_203 0.36 0.7
500,100 + 8571 mRNA_203 0.63 -0.2
500,110 + 8571 mRNA_203 0.65 1.8
500,274 - -0.8
500,401 - 8572 mRNA_204 0.15 1.4
500,425 - 8572 mRNA_204 0.20 1.0
500,538 - 8572 mRNA_204 0.40 0.4
500,549 - 8572 mRNA_204 0.42 -0.8
500,550 + 8572 mRNA_204 0.42 -0.8
500,553 - 8572 mRNA_204 0.43 -0.1
500,553 - 8572 mRNA_204 0.43 0.8
500,563 - 8572 mRNA_204 0.44 0.1
500,566 - 8572 mRNA_204 0.45 -0.4
500,566 - 8572 mRNA_204 0.45 -0.8
500,573 - 8572 mRNA_204 0.46 0.2
500,608 - 8572 mRNA_204 0.53 0.3
500,633 + 8572 mRNA_204 0.57 0.4
500,660 + 8572 mRNA_204 0.62 0.2
500,710 + 8572 mRNA_204 0.71 -2.5
500,712 - 8572 mRNA_204 0.71 0.7
500,858 - 0.8
500,959 - 1.5
500,963 - 0.3
500,974 + 0.9
501,553 + 8573 mRNA_205 0.81 3.1
501,565 - 8573 mRNA_205 0.83 0.1
501,578 - 8573 mRNA_205 0.85 0.8