Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_176

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429470 to 431854 8543 mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432530 to 433945 8544 mRNA_177: 8545 - KOG4096 Uncharacterized conserved protein, at 434117 to 434779 8545

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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431,611 + 8543 mRNA_175 0.90 0.2
431,682 + 0.1
431,765 + -0.2
431,780 - 0.7
431,801 - -0.6
431,802 + -0.3
431,817 - 0.4
431,839 + -1.0
431,942 + 0.0
431,952 - -0.1
431,964 + 0.6
431,969 + 0.8
431,969 - -0.7
431,973 + 0.7
431,974 + 1.1
431,978 - -0.1
431,986 + 0.6
431,988 + 0.2
431,990 + 2.7
431,991 + 0.7
431,991 - 0.6
431,997 + 1.7
432,005 - 0.1
432,005 - 0.2
432,013 + 0.9
432,031 + 1.9
432,044 + 1.5
432,045 + 0.3
432,049 + 0.5
432,049 + -0.4
432,054 + 0.6
432,068 + -1.2
432,070 + -0.4
432,072 - 1.3
432,072 - -0.3
432,073 + 1.6
432,079 + -0.5
432,085 + 0.0
432,089 + 0.9
432,093 + -0.6
432,111 + 0.5
432,150 + -0.3
432,151 + 1.3
432,155 + -0.4
432,160 - 0.0
432,167 + -0.2
432,168 + 2.0
432,174 - -0.8
432,181 - 2.4
432,188 + 1.1
432,191 - 0.9
432,193 - 0.2
432,194 + 0.7
432,197 - 1.0
432,202 + -0.5
432,204 - 0.2
432,209 - 0.4
432,211 - -0.1
432,213 - -1.3
432,222 - 0.8
432,224 + 1.6
432,230 + 0.1
432,231 + 1.9
432,267 - 2.0
432,274 - 0.3
432,290 - 1.0
432,330 - 0.6
432,336 - -0.3
432,336 + -0.3
432,337 + 0.2
432,347 + -0.9
432,351 + 1.5
432,365 - 0.6
432,373 - -0.9
432,378 + -0.1
432,388 + 1.4
432,815 - 8544 mRNA_176 0.20 1.0
432,819 + 8544 mRNA_176 0.20 1.0
432,830 + 8544 mRNA_176 0.21 -0.6
432,839 - 8544 mRNA_176 0.22 1.6
433,126 - 8544 mRNA_176 0.42 -1.9
434,612 + 8545 mRNA_177 0.75 1.5
434,620 + 8545 mRNA_177 0.76 -0.3
434,733 - -0.1
434,745 - 0.5
434,871 + 0.3
434,885 - -0.3
434,888 + 0.6