Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_129

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496 mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312995 to 315210 8497 mRNA_130: 8498 - BLAST 60S ribosomal protein L18-B [Termitomyces sp. J132], at 315301 to 316369 8498

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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312,419 - 0.4
312,538 - -0.6
312,542 - 1.5
312,564 - 0.2
312,708 + -0.6
312,811 - 0.8
312,844 - 0.8
312,966 - 1.1
312,983 - 1.1
312,985 + 0.3
312,999 + 0.7
313,176 + 1.7
313,308 + 8497 mRNA_129 0.14 0.3
313,308 + 8497 mRNA_129 0.14 1.2
313,481 + 8497 mRNA_129 0.22 -0.9
313,486 - 8497 mRNA_129 0.22 -0.8
313,593 + 8497 mRNA_129 0.27 0.6
313,604 + 8497 mRNA_129 0.27 0.6
313,979 + 8497 mRNA_129 0.44 1.3
314,043 + 8497 mRNA_129 0.47 0.6
314,200 - 8497 mRNA_129 0.54 -0.7
315,038 + 1.5
315,182 + -1.3
315,207 - 0.2