Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_114

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267088 to 267405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267754 to 270066 8482 mRNA_115: 8483 - K14950 ATP13A1 cation-transporting ATPase 13A1, at 270395 to 274744 8483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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266,777 + -0.1
266,894 - 0.8
266,900 + 0.7
266,900 + 0.3
267,130 - 8481 mRNA_113 0.13 1.1
267,140 - 8481 mRNA_113 0.16 1.5
267,314 - 8481 mRNA_113 0.71 -0.4
267,332 + 8481 mRNA_113 0.77 1.9
267,340 - 8481 mRNA_113 0.79 1.8
267,482 + 3.6
267,499 + 1.4
267,885 + 2.0
267,886 - 1.5
268,053 - 8482 mRNA_114 0.13 0.9
268,059 + 8482 mRNA_114 0.13 0.3
268,554 + 8482 mRNA_114 0.35 -0.2
268,613 - 8482 mRNA_114 0.37 -2.0
268,637 - 8482 mRNA_114 0.38 1.5
268,643 + 8482 mRNA_114 0.38 0.5
268,648 - 8482 mRNA_114 0.39 -0.1
268,779 - 8482 mRNA_114 0.44 -0.5
268,785 + 8482 mRNA_114 0.45 0.6
268,794 + 8482 mRNA_114 0.45 1.1
268,903 - 8482 mRNA_114 0.50 0.1
268,918 + 8482 mRNA_114 0.50 -0.3
269,061 - 8482 mRNA_114 0.57 -0.2
269,235 - 8482 mRNA_114 0.64 0.1
269,243 - 8482 mRNA_114 0.64 -0.2
269,395 + 8482 mRNA_114 0.71 -1.3
269,467 + 8482 mRNA_114 0.74 0.1
269,797 - 8482 mRNA_114 0.88 1.8
269,885 - -0.9
269,917 - 0.5
270,081 - -0.6
270,083 - 0.3
270,230 + -1.0
270,245 + 0.6
270,248 + 1.6
270,256 + 0.5