Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_104

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471 mRNA_104: 8472 - Hypothetical Protein, at 250227 to 251681 8472 mRNA_105: 8473 - K08504 BET1 blocked early in transport 1, at 251697 to 252245 8473 mRNA_106: 8474 - K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4), at 252623 to 256756 8474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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249,257 - 8471 mRNA_103 0.37 1.0
249,294 + 8471 mRNA_103 0.41 1.1
249,356 + 8471 mRNA_103 0.47 0.5
249,626 - 8471 mRNA_103 0.75 0.1
249,667 + 8471 mRNA_103 0.79 1.1
249,692 - 8471 mRNA_103 0.82 0.9
249,740 + 8471 mRNA_103 0.87 2.0
249,768 + -0.1
249,881 - -0.0
249,884 - 1.3
249,912 - 0.4
249,996 - -0.5
250,000 + -0.5
250,001 + -0.4
250,069 - -0.8
250,081 - 0.7
250,090 - -0.4
250,107 + 0.5
250,210 - -0.5
250,230 + -0.7
250,366 - -0.4
250,384 + 8472 mRNA_104 0.11 -0.7
250,458 - 8472 mRNA_104 0.16 0.1
250,484 + 8472 mRNA_104 0.18 -0.0
250,652 + 8472 mRNA_104 0.29 0.2
250,657 - 8472 mRNA_104 0.30 1.0
251,150 + 8472 mRNA_104 0.63 0.3
251,214 + 8472 mRNA_104 0.68 1.1
251,362 + 8472 mRNA_104 0.78 -0.3
251,403 + 8472 mRNA_104 0.81 -0.2
251,489 + 8472 mRNA_104 0.87 0.3
251,552 + 0.8
252,568 - -0.6