Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_102

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243748 to 246867 8469 mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247531 to 248783 8470 mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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246,765 + -0.4
246,820 + 1.6
246,821 - 1.7
247,050 + 2.2
247,075 - -0.5
247,094 - 0.1
247,125 + 0.1
247,146 - -0.2
247,147 - 0.6
247,147 + -0.3
247,164 + -0.7
247,165 - -0.6
247,170 + -0.4
247,180 + -0.5
247,762 + 8470 mRNA_102 0.18 -2.4
247,948 - 8470 mRNA_102 0.33 0.2
248,083 - 8470 mRNA_102 0.44 0.3
248,427 - 8470 mRNA_102 0.72 2.0
248,432 - 8470 mRNA_102 0.72 -1.0
248,579 + 8470 mRNA_102 0.84 0.2
248,657 + 8470 mRNA_102 0.90 -0.4
248,664 + 0.5
248,677 + -0.2
248,744 + 0.4
248,752 + 0.3
249,020 - 8471 mRNA_103 0.12 1.0
249,179 - 8471 mRNA_103 0.29 2.6
249,180 - 8471 mRNA_103 0.29 0.3
249,257 - 8471 mRNA_103 0.37 1.0
249,294 + 8471 mRNA_103 0.41 1.1
249,356 + 8471 mRNA_103 0.47 0.5
249,626 - 8471 mRNA_103 0.75 0.1
249,667 + 8471 mRNA_103 0.79 1.1
249,692 - 8471 mRNA_103 0.82 0.9
249,740 + 8471 mRNA_103 0.87 2.0
249,768 + -0.1