Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_74

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_73: 8441 - K00698 CHS1 chitin synthase, at 169827 to 173814 8441 mRNA_74: 8442 - KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240, at 174089 to 180350 8442 mRNA_75: 8443 - K00606 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 180761 to 182108 8443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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173,174 - 8441 mRNA_73 0.84 0.0
173,424 - -0.4
173,424 + 0.2
173,518 - 1.4
173,553 - -1.3
173,837 + -0.1
173,862 + 3.0
174,086 - 2.2
174,096 - -0.1
174,298 + -0.8
174,298 + -0.5
174,532 + -1.5
174,678 + 0.8
175,095 + 8442 mRNA_74 0.16 -0.5
175,157 - 8442 mRNA_74 0.17 2.3
175,289 - 8442 mRNA_74 0.19 1.3
175,299 + 8442 mRNA_74 0.19 0.2
175,299 + 8442 mRNA_74 0.19 0.1
175,316 + 8442 mRNA_74 0.20 -0.3
175,319 - 8442 mRNA_74 0.20 1.4
175,385 - 8442 mRNA_74 0.21 -0.5
175,451 - 8442 mRNA_74 0.22 0.2
175,644 - 8442 mRNA_74 0.25 1.1
175,761 - 8442 mRNA_74 0.27 -1.7
175,765 - 8442 mRNA_74 0.27 0.1
176,077 + 8442 mRNA_74 0.32 -0.1
176,138 + 8442 mRNA_74 0.33 1.5
176,139 + 8442 mRNA_74 0.33 -0.5
176,147 + 8442 mRNA_74 0.33 0.2
176,161 + 8442 mRNA_74 0.33 0.9
176,337 - 8442 mRNA_74 0.36 2.0
176,372 - 8442 mRNA_74 0.36 -0.0
176,389 - 8442 mRNA_74 0.37 0.1
176,396 + 8442 mRNA_74 0.37 -0.1
176,475 - 8442 mRNA_74 0.38 -0.2
176,657 - 8442 mRNA_74 0.41 0.1
176,777 - 8442 mRNA_74 0.43 -0.5
177,387 + 8442 mRNA_74 0.53 -1.3
177,680 + 8442 mRNA_74 0.57 0.3
177,811 - 8442 mRNA_74 0.59 0.5
177,820 - 8442 mRNA_74 0.60 -3.5
177,921 - 8442 mRNA_74 0.61 -1.0
178,039 + 8442 mRNA_74 0.63 1.6
178,086 - 8442 mRNA_74 0.64 -0.8
178,139 - 8442 mRNA_74 0.65 1.1
178,177 - 8442 mRNA_74 0.65 -1.2
178,220 + 8442 mRNA_74 0.66 -0.6
178,225 + 8442 mRNA_74 0.66 2.2
178,264 + 8442 mRNA_74 0.67 -1.3
178,348 - 8442 mRNA_74 0.68 -0.4
178,365 - 8442 mRNA_74 0.68 -0.0
178,370 + 8442 mRNA_74 0.68 0.2
178,377 + 8442 mRNA_74 0.68 0.0
178,568 + 8442 mRNA_74 0.72 -0.8
178,607 + 8442 mRNA_74 0.72 -0.7
178,796 - 8442 mRNA_74 0.75 0.6
178,945 + 8442 mRNA_74 0.78 -0.7
179,244 + 8442 mRNA_74 0.82 0.4
179,397 + 8442 mRNA_74 0.85 -0.1
179,411 + 8442 mRNA_74 0.85 -0.3
179,415 + 8442 mRNA_74 0.85 0.9
179,537 - 8442 mRNA_74 0.87 0.8
180,123 - 1.0
180,125 - 1.3
180,135 + 3.2
180,143 - 0.0
180,149 + -0.1
180,430 + 0.0
180,431 - 2.6
180,435 - 0.5
180,437 - 0.0
180,448 - 0.1
180,455 + -0.0
180,586 - 0.8
180,721 + -0.6
180,893 - -1.0
180,894 + 0.7
181,040 - 8443 mRNA_75 0.21 0.9