Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_68

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156273 to 158120 8435 mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158685 to 163751 8436 mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163948 to 165826 8437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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157,835 - 8435 mRNA_67 0.85 0.1
157,966 - 0.1
158,031 + 0.5
158,054 + 0.7
158,069 - 0.4
158,176 + 1.5
158,177 - 1.3
158,179 - 0.6
158,183 - -0.0
158,192 - 1.2
158,193 + 0.6
158,193 + -0.2
158,196 - 0.6
158,296 + 0.5
158,320 - 2.2
158,333 + 0.3
158,341 - -0.3
158,347 - -0.2
158,387 + 1.1
158,636 + 1.7
158,639 - 0.6
158,650 - 0.0
158,678 + -0.5
158,949 - -0.2
159,101 - 0.2
159,853 - 8436 mRNA_68 0.23 0.2
161,440 - 8436 mRNA_68 0.54 -0.3
162,603 + 8436 mRNA_68 0.77 0.8
162,916 - 8436 mRNA_68 0.84 0.2
163,919 + -1.0
163,920 + 2.3
164,051 - 0.2
164,314 + 8437 mRNA_69 0.19 -0.7
164,349 - 8437 mRNA_69 0.21 -0.7