Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_39

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436 8406 mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759 8407 mRNA_40: 8408 - Hypothetical Protein, at 96128 to 97227 8408

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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93,961 + 8406 mRNA_38 0.50 0.2
93,965 - 8406 mRNA_38 0.50 1.2
94,027 + 8406 mRNA_38 0.57 -0.9
94,084 - 8406 mRNA_38 0.63 0.4
94,169 - 8406 mRNA_38 0.72 0.3
94,285 + 8406 mRNA_38 0.84 0.6
94,288 - 8406 mRNA_38 0.84 0.3
94,288 - 8406 mRNA_38 0.84 0.3
94,445 + 0.7
94,491 + -0.6
94,515 - 1.1
94,534 - -0.4
94,631 - -0.6
94,635 - 0.5
94,683 - -0.6
94,686 - 1.3
94,687 + -0.4
94,687 + 1.9
94,800 + 1.0
94,800 + -0.7
94,803 - 0.7
94,803 - 0.7
94,803 - 0.1
94,890 + -0.3
94,917 + 0.2
94,917 - -0.3
94,943 + 1.3
94,975 + 8407 mRNA_39 0.12 -0.2
94,980 + 8407 mRNA_39 0.13 0.8
94,993 + 8407 mRNA_39 0.14 0.1
95,108 + 8407 mRNA_39 0.27 0.9
95,126 - 8407 mRNA_39 0.29 0.9
95,176 - 8407 mRNA_39 0.35 2.3
95,240 - 8407 mRNA_39 0.42 -0.9
95,274 - 8407 mRNA_39 0.46 1.3
95,475 - 8407 mRNA_39 0.68 0.6
95,528 - 8407 mRNA_39 0.74 1.6
95,566 - 8407 mRNA_39 0.78 1.2
95,645 - 8407 mRNA_39 0.87 1.7
95,648 + 8407 mRNA_39 0.87 -1.6
95,650 - 8407 mRNA_39 0.88 -0.3
95,707 + 1.6
95,713 - -0.4
95,750 + 1.9
95,770 + -0.1
95,809 - 0.5
95,818 - -0.6
95,823 + 0.1
96,060 + -1.5
96,091 - -0.5
96,091 + -0.5
96,109 + 1.6
96,270 - 8408 mRNA_40 0.13 -0.0
96,357 - 8408 mRNA_40 0.21 -0.4
96,366 + 8408 mRNA_40 0.22 1.1
96,378 + 8408 mRNA_40 0.23 -0.8
96,410 - 8408 mRNA_40 0.26 0.2
96,462 + 8408 mRNA_40 0.30 0.4
96,560 + 8408 mRNA_40 0.39 0.5
96,621 - 8408 mRNA_40 0.45 1.2
96,674 - 8408 mRNA_40 0.50 0.3
96,754 - 8408 mRNA_40 0.57 0.8