Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12047 to 13694 8373 mRNA_6: 8374 - SUPERFAMILY--SSF47676, at 13861 to 19221 8374 mRNA_7: 8375 - HMMPfam-LIM-domain binding protein-PF01803,PRINTS-Proline rich extensin signature-PR01217, at 20174 to 22955 8375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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13,000 + 8373 mRNA_5 0.58 0.8
13,103 - 8373 mRNA_5 0.64 0.2
13,133 - 8373 mRNA_5 0.66 0.2
13,202 + 8373 mRNA_5 0.70 1.5
13,404 + 8373 mRNA_5 0.82 -1.0
13,578 + 0.1
13,700 + 0.3
13,752 - -1.0
13,753 + -0.4
13,839 + 0.2
13,938 + -0.9
13,998 + 0.1
14,325 - 0.2
14,378 - -0.5
14,384 + -0.4
14,441 - 8374 mRNA_6 0.11 0.8
14,447 + 8374 mRNA_6 0.11 0.2
14,457 + 8374 mRNA_6 0.11 1.3
14,479 + 8374 mRNA_6 0.12 0.1
14,583 - 8374 mRNA_6 0.13 -2.0
14,756 - 8374 mRNA_6 0.17 -1.4
15,193 - 8374 mRNA_6 0.25 1.1
15,213 + 8374 mRNA_6 0.25 1.0
15,268 - 8374 mRNA_6 0.26 1.2
15,348 + 8374 mRNA_6 0.28 1.7
15,352 - 8374 mRNA_6 0.28 -0.6
15,355 + 8374 mRNA_6 0.28 0.3
15,359 - 8374 mRNA_6 0.28 -0.1
15,363 + 8374 mRNA_6 0.28 -1.0
15,400 - 8374 mRNA_6 0.29 1.1
15,404 - 8374 mRNA_6 0.29 1.2
15,483 - 8374 mRNA_6 0.30 1.0
15,520 + 8374 mRNA_6 0.31 2.2
15,618 + 8374 mRNA_6 0.33 0.2
15,618 + 8374 mRNA_6 0.33 0.1
15,660 - 8374 mRNA_6 0.34 2.1
15,677 - 8374 mRNA_6 0.34 -0.3
15,692 + 8374 mRNA_6 0.34 2.0
15,800 - 8374 mRNA_6 0.36 1.5
15,809 + 8374 mRNA_6 0.36 0.4
15,823 - 8374 mRNA_6 0.37 1.6
15,829 + 8374 mRNA_6 0.37 1.4
15,910 + 8374 mRNA_6 0.38 0.7
16,001 + 8374 mRNA_6 0.40 2.3
16,005 + 8374 mRNA_6 0.40 0.1
16,009 - 8374 mRNA_6 0.40 2.9
19,901 - 0.1
19,908 - 0.3
20,059 - -0.2
20,080 - 0.3
20,080 + 0.4
20,086 + 0.6
20,087 + -0.6
20,087 - 0.3
20,094 + 1.2
20,099 + 2.0
20,218 + 1.2