Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370 mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8155 to 10023 8371 mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10225 to 11839 8372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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7,817 - 1.4
7,865 + 1.3
7,991 + 0.6
8,148 - 0.0
8,150 - -0.2
8,205 - 0.1
8,285 + -0.2
8,396 + 8371 mRNA_3 0.13 1.3
8,694 - 8371 mRNA_3 0.29 0.1
8,707 + 8371 mRNA_3 0.30 0.9
9,140 - 8371 mRNA_3 0.53 0.7
9,147 - 8371 mRNA_3 0.53 0.5
9,290 + 8371 mRNA_3 0.61 1.4
9,293 - 8371 mRNA_3 0.61 1.7
9,293 - 8371 mRNA_3 0.61 1.2
9,321 + 8371 mRNA_3 0.62 1.7
9,595 - 8371 mRNA_3 0.77 1.0
9,699 + 8371 mRNA_3 0.83 0.9
9,699 + 8371 mRNA_3 0.83 1.8
9,864 - 0.1
9,885 + 1.4
9,887 - 0.8
9,889 + 0.5
9,890 - 0.2
9,920 + -1.8
9,921 + 0.9
9,946 - 2.8
9,986 + 0.2
9,998 - -0.3
10,003 - 1.2
10,039 - 0.3
10,045 - 0.8
10,059 + 0.6
10,066 + 1.0
10,067 + 1.0
10,071 + 0.4
10,074 - -0.2
10,076 - -0.5
10,095 + 0.3
10,120 + 1.4
10,123 + 0.6
10,197 + 1.3
10,214 + 0.3
10,229 + -0.6
10,230 - 1.4
10,241 + -1.1
10,241 + -1.3
10,357 - -1.0
10,521 - 8372 mRNA_4 0.18 -1.8
10,663 + 8372 mRNA_4 0.27 0.9
10,915 - 8372 mRNA_4 0.43 0.5