Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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595 + 0.0
609 - 0.3
637 - -0.4
651 + 0.6
654 + 0.8
659 - 0.4
663 + -0.1
672 - 0.5
673 + 0.5
685 + 0.2
725 + -2.6
790 - -1.2
791 + 0.3
798 + -0.1
798 + 0.9
804 - 1.9
821 + -2.0
860 + 0.8
899 - 0.6
916 + 2.1
939 + 0.7
957 + -0.1
975 - 0.8
976 + 2.1
996 - 1.8
1,005 + -1.5
1,005 - 1.4
1,007 - -0.9
1,052 + 1.2
1,058 + 1.3
1,070 + -0.7
1,113 - 1.9
1,115 - 0.6
1,117 + 0.3
1,207 + -0.1
1,257 + 0.1
1,285 - 0.4
1,359 - -0.1
1,422 + 0.7
1,960 + 8369 mRNA_1 0.44 1.0
2,268 + 8369 mRNA_1 0.79 -0.4
2,361 - 8369 mRNA_1 0.89 1.5
2,441 + -0.4
2,550 + -0.1
2,552 - 1.0
2,564 + 0.5
2,701 + 3.0
2,839 - 1.2
2,853 + 1.1
2,946 - 0.1
3,005 - 0.4
3,125 - 0.7
3,136 + 1.4