Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8421

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8420: 16788 - SUPERFAMILY--SSF52047, at 1181811 to 1183583 16788 mRNA_8421: 16789 - K05285 PIGN phosphatidylinositol glycan, class N, at 1183615 to 1187180 16789 mRNA_8422: 16790 - K06675 SMC4 structural maintenance of chromosome 4, at 1187443 to 1193584 16790

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,182,630 - 16788 mRNA_8420 0.46 0.3
1,182,778 + 16788 mRNA_8420 0.55 1.0
1,182,904 + 16788 mRNA_8420 0.62 -0.1
1,182,967 - 16788 mRNA_8420 0.65 -2.6
1,182,983 + 16788 mRNA_8420 0.66 0.4
1,183,039 - 16788 mRNA_8420 0.69 0.1
1,183,097 + 16788 mRNA_8420 0.73 -0.3
1,183,118 + 16788 mRNA_8420 0.74 0.9
1,183,119 + 16788 mRNA_8420 0.74 0.8
1,183,189 - 16788 mRNA_8420 0.78 0.5
1,183,192 - 16788 mRNA_8420 0.78 -0.8
1,183,198 - 16788 mRNA_8420 0.78 0.2
1,183,209 + 16788 mRNA_8420 0.79 -0.5
1,183,220 + 16788 mRNA_8420 0.79 -0.9
1,183,231 - 16788 mRNA_8420 0.80 -0.4
1,183,249 + 16788 mRNA_8420 0.81 0.6
1,183,440 + -0.4
1,183,456 - -0.1
1,183,551 + 0.6
1,183,646 - 0.0
1,183,782 - -0.4
1,183,981 + 16789 mRNA_8421 0.10 0.3
1,184,385 + 16789 mRNA_8421 0.22 0.1
1,184,504 + 16789 mRNA_8421 0.25 0.2
1,184,719 + 16789 mRNA_8421 0.31 -0.9
1,184,721 - 16789 mRNA_8421 0.31 1.4
1,184,752 - 16789 mRNA_8421 0.32 1.1
1,184,834 + 16789 mRNA_8421 0.34 0.1
1,185,006 - 16789 mRNA_8421 0.39 0.5
1,185,227 + 16789 mRNA_8421 0.45 1.8
1,185,325 + 16789 mRNA_8421 0.48 0.2
1,185,332 - 16789 mRNA_8421 0.48 0.3
1,185,390 + 16789 mRNA_8421 0.50 -0.8
1,185,390 + 16789 mRNA_8421 0.50 0.7
1,185,449 - 16789 mRNA_8421 0.51 0.9
1,185,455 + 16789 mRNA_8421 0.52 0.5
1,185,457 - 16789 mRNA_8421 0.52 -0.5
1,185,460 + 16789 mRNA_8421 0.52 1.8
1,185,600 - 16789 mRNA_8421 0.56 0.2
1,185,749 - 16789 mRNA_8421 0.60 -0.7
1,185,750 + 16789 mRNA_8421 0.60 -0.1
1,185,869 + 16789 mRNA_8421 0.63 -2.8
1,185,893 + 16789 mRNA_8421 0.64 1.0
1,186,030 - 16789 mRNA_8421 0.68 0.8
1,186,037 + 16789 mRNA_8421 0.68 0.8
1,186,098 - 16789 mRNA_8421 0.70 0.4
1,186,142 - 16789 mRNA_8421 0.71 0.1
1,186,204 - 16789 mRNA_8421 0.73 0.1
1,186,314 + 16789 mRNA_8421 0.76 0.5
1,186,463 + 16789 mRNA_8421 0.80 1.1
1,186,514 + 16789 mRNA_8421 0.81 -0.8
1,186,589 - 16789 mRNA_8421 0.83 -0.6
1,186,626 + 16789 mRNA_8421 0.84 -1.3
1,186,627 + 16789 mRNA_8421 0.84 -1.6
1,186,637 - 16789 mRNA_8421 0.85 -1.5
1,186,779 - 16789 mRNA_8421 0.89 1.4
1,186,887 - 0.8
1,186,909 - 1.5
1,186,936 + 1.0
1,187,192 - 0.2
1,187,213 - 0.1
1,187,247 + 0.4
1,187,280 + -0.1
1,187,330 - 1.2
1,187,384 + 0.5
1,187,392 - -0.4
1,187,400 + -1.8