Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8352

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8351: 16719 - K14303 NUP160, NUP120 nuclear pore complex protein Nup160, at 1006818 to 1012012 16719 mRNA_8352: 16720 - Hypothetical Protein, at 1012980 to 1013679 16720 mRNA_8353: 16721 - BLAST Clampless protein 1 [Leucoagaricus sp. SymC.cos], at 1014385 to 1015330 16721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,011,993 + -0.2
1,011,998 - -2.2
1,012,004 + 0.1
1,012,274 + -0.6
1,012,614 - 2.5
1,012,872 - -0.4
1,012,893 - 0.8
1,013,199 + 16720 mRNA_8352 0.31 -1.6
1,013,200 + 16720 mRNA_8352 0.31 -0.4
1,013,200 + 16720 mRNA_8352 0.31 -0.6
1,013,214 - 16720 mRNA_8352 0.33 0.4
1,013,319 - 16720 mRNA_8352 0.48 -1.4
1,013,323 - 16720 mRNA_8352 0.49 0.2
1,013,327 - 16720 mRNA_8352 0.50 -1.0
1,013,330 + 16720 mRNA_8352 0.50 -0.7
1,013,333 - 16720 mRNA_8352 0.50 -0.9
1,013,336 + 16720 mRNA_8352 0.51 -0.6
1,013,339 + 16720 mRNA_8352 0.51 2.2
1,013,341 - 16720 mRNA_8352 0.52 1.0
1,013,344 + 16720 mRNA_8352 0.52 0.2
1,013,352 - 16720 mRNA_8352 0.53 0.1
1,013,361 - 16720 mRNA_8352 0.54 1.4
1,013,369 - 16720 mRNA_8352 0.56 0.1
1,013,370 + 16720 mRNA_8352 0.56 0.6
1,013,498 + 16720 mRNA_8352 0.74 0.2
1,013,500 - 16720 mRNA_8352 0.74 0.8
1,013,502 + 16720 mRNA_8352 0.75 -0.2
1,013,581 + 16720 mRNA_8352 0.86 0.8
1,013,967 - 1.2
1,013,985 - 0.3
1,014,108 + -0.2
1,014,113 - -0.8
1,014,116 + -0.2
1,014,126 - -0.4
1,014,129 + 1.5
1,014,234 + 0.1
1,014,303 - 0.1