Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8345

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8344: 16712 - K20308 TRAPPC11 trafficking protein particle complex subunit 11, at 984444 to 989069 16712 mRNA_8345: 16713 - K00062 E1.1.1.116 D-arabinose 1-dehydrogenase, at 989216 to 990816 16713 mRNA_8346: 16714 - Hypothetical Protein, at 991012 to 994561 16714

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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988,531 + 16712 mRNA_8344 0.88 0.8
988,671 - 0.4
988,825 - 1.1
988,833 - 0.2
988,988 + 0.2
989,272 - 1.9
989,274 + 0.1
989,275 + 1.0
989,387 - 16713 mRNA_8345 0.11 0.2
989,389 - 16713 mRNA_8345 0.11 -0.6
989,393 - 16713 mRNA_8345 0.11 0.3
989,418 + 16713 mRNA_8345 0.13 3.1
989,426 - 16713 mRNA_8345 0.13 1.9
989,593 - 16713 mRNA_8345 0.24 -0.0
989,595 - 16713 mRNA_8345 0.24 -0.3
990,429 + 16713 mRNA_8345 0.76 1.4
990,552 - 16713 mRNA_8345 0.83 0.5
990,992 - -0.3
991,003 + -0.7
991,039 + 1.2
991,323 + 0.5
991,420 + 16714 mRNA_8346 0.11 0.1
991,448 - 16714 mRNA_8346 0.12 0.8
991,752 - 16714 mRNA_8346 0.21 0.2