Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8337

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704 mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968158 to 970145 16705 mRNA_8338: 16706 - Hypothetical Protein, at 970678 to 971361 16706

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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967,215 + 16704 mRNA_8336 0.66 0.5
967,236 + 16704 mRNA_8336 0.67 -1.0
967,279 + 16704 mRNA_8336 0.70 -0.5
967,504 + 16704 mRNA_8336 0.85 -0.1
967,657 + -0.6
967,666 + -0.8
967,796 + -0.3
967,803 - 1.4
967,807 - -1.1
967,809 + 0.7
967,811 - 1.7
967,813 + 0.2
967,815 - -0.6
967,837 - -0.8
967,850 + -0.9
967,861 + -0.4
967,863 - 0.3
968,012 + 3.1
968,034 - 0.9
968,128 - -0.5
968,435 - 16705 mRNA_8337 0.14 0.0
968,608 - 16705 mRNA_8337 0.23 0.7
968,717 + 16705 mRNA_8337 0.28 -0.0
968,742 + 16705 mRNA_8337 0.29 -0.3
969,034 + 16705 mRNA_8337 0.44 0.9
969,321 + 16705 mRNA_8337 0.59 2.0
969,341 + 16705 mRNA_8337 0.60 0.1
969,469 + 16705 mRNA_8337 0.66 1.0
969,592 - 16705 mRNA_8337 0.72 0.4
969,746 - 16705 mRNA_8337 0.80 0.3
969,895 - 16705 mRNA_8337 0.87 0.2
969,904 + 16705 mRNA_8337 0.88 -0.8
970,019 + 1.3
970,078 + 2.6
970,083 + -0.2
970,371 + 0.3
970,375 - 1.0
970,376 + 0.5
970,377 + -0.1
970,409 + 0.0
970,431 + -0.8
970,471 + 0.3
970,487 - -0.2
970,495 + 0.2
970,503 - -0.0
970,620 - 0.4
970,793 + 16706 mRNA_8338 0.17 0.4