Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8279

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8278: 16646 - K16330 K16330 pseudouridylate synthase / pseudouridine kinase, at 825362 to 828181 16646 mRNA_8279: 16647 - BLAST Type-1 angiotensin II receptor-associated protein [Ch..., at 829000 to 829923 16647 mRNA_8280: 16648 - KOG2157 Predicted tubulin-tyrosine ligase, at 830220 to 831668 16648

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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828,247 - 0.9
828,405 + -1.1
828,668 + -0.1
828,801 - 0.0
828,812 + 0.5
828,820 - -1.9
828,839 + 0.2
828,843 + 1.3
828,845 + -0.7
828,848 - 0.1
828,983 - -0.8
828,984 + 0.7
828,986 - 0.2
828,994 - 1.8
828,999 + -0.6
829,001 + -1.3
829,005 - 1.5
829,695 - 16647 mRNA_8279 0.75 0.3
829,699 + 16647 mRNA_8279 0.76 1.2
829,699 + 16647 mRNA_8279 0.76 2.4
829,717 + 16647 mRNA_8279 0.78 -0.5
829,992 + -0.1
829,999 - 0.1
830,012 + -0.3
830,135 - 0.3
830,283 + -0.7
830,307 + 0.1
830,456 + 16648 mRNA_8280 0.16 -0.4