Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8263

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792361 to 796882 16630 mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797648 to 800551 16631 mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800850 to 802295 16632

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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796,756 + -1.8
796,770 + -4.6
796,773 - -2.6
796,793 - -4.0
796,809 + -0.6
796,906 - -1.4
796,906 + -3.4
796,926 + -4.7
796,939 + -1.3
796,944 - -2.7
796,956 + -0.9
797,053 - -1.1
797,057 - -0.4
797,082 - -1.7
797,084 + -3.5
797,087 - -0.6
797,090 + 0.0
797,112 - -0.3
797,221 + -0.5
797,222 + -1.6
797,223 - 0.9
797,238 - 1.3
797,251 - 1.4
797,275 + 2.2
797,283 - -0.7
797,284 + 0.0
797,288 - 2.0
797,300 + -2.1
797,301 + -1.5
797,319 - -1.1
797,321 - -0.4
797,356 + 1.6
797,360 - -0.9
797,361 - 0.7
797,376 - 0.3
797,377 + -1.5
797,389 - 0.2
797,408 + 1.1
797,413 - 1.7
797,415 + 1.2
797,424 + -1.3
797,714 - 1.1
797,863 - 1.6
797,872 - 1.8
797,890 + -0.3
798,027 + 16631 mRNA_8263 0.13 -0.4
798,299 - 16631 mRNA_8263 0.22 2.3
798,593 - 16631 mRNA_8263 0.33 -2.3
798,847 + 16631 mRNA_8263 0.41 -0.7
799,171 - 16631 mRNA_8263 0.52 -1.1
799,718 + 16631 mRNA_8263 0.71 -0.0
800,021 - 16631 mRNA_8263 0.82 -1.1
800,035 + 16631 mRNA_8263 0.82 0.9
800,188 + 16631 mRNA_8263 0.87 0.2
800,300 - -0.7
800,626 - -0.2
800,648 + 0.2
801,024 + 16632 mRNA_8264 0.12 1.1
801,195 + 16632 mRNA_8264 0.24 0.8
801,226 - 16632 mRNA_8264 0.26 -2.3