Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8259

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8258: 16626 - Hypothetical Protein, at 783598 to 784234 16626 mRNA_8259: 16627 - HMMPfam-DENN (AEX-3) domain-PF02141,ProSiteProfiles-DENN domain profile.-PS50211,SMART-Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN-SM00799, at 784398 to 789104 16627 mRNA_8260: 16628 - KOG2354 RNA Polymerase C (III) 37 kDa subunit, at 789466 to 790634 16628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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783,691 - 16626 mRNA_8258 0.15 1.6
783,982 + 16626 mRNA_8258 0.60 1.5
785,036 - 16627 mRNA_8259 0.14 0.1
785,180 - 16627 mRNA_8259 0.17 -0.3
785,336 + 16627 mRNA_8259 0.20 -0.1
785,339 - 16627 mRNA_8259 0.20 0.1
785,485 + 16627 mRNA_8259 0.23 0.3
785,579 + 16627 mRNA_8259 0.25 0.5
785,928 + 16627 mRNA_8259 0.33 0.1
786,272 - 16627 mRNA_8259 0.40 -0.1
786,429 + 16627 mRNA_8259 0.43 -0.9
786,686 - 16627 mRNA_8259 0.49 0.5
786,698 + 16627 mRNA_8259 0.49 -1.5
786,856 - 16627 mRNA_8259 0.52 -0.1
786,856 + 16627 mRNA_8259 0.52 -0.2
787,600 - 16627 mRNA_8259 0.68 0.8
787,732 - 16627 mRNA_8259 0.71 -0.9
788,146 - 16627 mRNA_8259 0.80 -0.4
788,192 + 16627 mRNA_8259 0.81 -0.9
788,367 + 16627 mRNA_8259 0.84 -1.5
788,380 + 16627 mRNA_8259 0.85 1.5
789,040 - 1.0
789,241 + -0.8