Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8237

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733012 to 733833 16604 mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734227 to 736264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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733,232 - 16604 mRNA_8236 0.27 1.1
733,239 - 16604 mRNA_8236 0.28 0.4
733,659 - 16604 mRNA_8236 0.79 0.7
733,685 - 16604 mRNA_8236 0.82 0.1
733,692 - 16604 mRNA_8236 0.83 -0.2
733,692 - 16604 mRNA_8236 0.83 0.9
733,701 + 16604 mRNA_8236 0.84 0.8
733,725 - 16604 mRNA_8236 0.87 1.0
733,835 + -0.8
733,837 + -0.3
734,250 + -1.6
734,251 - -0.4
734,272 + 1.6
734,426 + 0.6
734,459 + 16605 mRNA_8237 0.11 0.4
734,581 + 16605 mRNA_8237 0.17 -0.4
734,656 - 16605 mRNA_8237 0.21 0.3
734,679 + 16605 mRNA_8237 0.22 -1.4
734,986 + 16605 mRNA_8237 0.37 -2.1
735,132 - 16605 mRNA_8237 0.44 -0.2
735,566 + 16605 mRNA_8237 0.66 0.8
735,704 + 16605 mRNA_8237 0.72 -0.8
735,822 + 16605 mRNA_8237 0.78 -0.2
735,983 - 16605 mRNA_8237 0.86 -0.0
736,010 - 16605 mRNA_8237 0.87 1.7
736,011 + 16605 mRNA_8237 0.88 0.1
736,019 + 16605 mRNA_8237 0.88 2.1
736,025 + 16605 mRNA_8237 0.88 1.4
736,137 - 0.4
736,148 + 0.3
736,169 + -0.4
736,172 - 1.0
736,224 - -0.5
736,309 - 0.4
736,315 + 1.4
736,324 - 0.3
736,329 + -0.3
736,329 - -0.0
736,334 - 2.1
736,350 - -1.9
736,351 + 0.2
736,457 + -1.1
736,479 - 2.0
736,487 - 2.4
736,488 - -0.6
736,488 + 1.3
736,490 - -1.8
736,498 + 2.3
736,500 - 0.3
736,501 - -0.8
736,501 + 0.7
736,502 + -0.0
736,502 + 0.4
736,502 + -0.1
736,503 + 0.8
736,504 - 1.2
736,505 + 0.8
736,505 - -1.2
736,506 - 0.5
736,508 + 1.0
736,510 + -0.1
736,511 - 0.8
736,511 - -0.4
736,544 - -0.5
736,545 + -0.1
736,546 - -1.0
736,566 + 0.3
736,581 + 1.1
736,663 - 0.7
736,675 + -0.3
736,686 + 0.6
736,714 - -0.8
736,714 + 0.4
736,725 - 0.9
736,731 - -0.2
736,745 + -0.2
736,857 - -0.3
736,863 + -0.2
736,866 - 0.6
736,881 + -0.1
737,003 - 16606 mRNA_8238 0.12 1.2
737,004 - 16606 mRNA_8238 0.12 -1.0
737,005 + 16606 mRNA_8238 0.13 1.1
737,012 - 16606 mRNA_8238 0.13 -0.3
737,036 - 16606 mRNA_8238 0.15 1.5