Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8228

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8227: 16595 - BLAST Post-SET domain protein [Cordyceps confragosa RCEF 1005], at 715339 to 716197 16595 mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716200 to 719512 16596 mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720080 to 721710 16597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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715,270 - 1.3
715,272 + 0.6
715,275 - 1.4
715,276 - 1.5
715,277 + 0.4
715,283 + -0.4
715,359 + 1.9
715,376 + 0.6
715,382 - 2.1
715,384 + 2.3
715,390 - -0.5
715,397 - 0.7
715,397 + 0.2
715,399 + -0.1
715,400 + 0.9
715,406 - 0.3
715,409 + 0.1
715,409 + -0.7
715,427 + 16595 mRNA_8227 0.10 -0.6
715,428 + 16595 mRNA_8227 0.10 -0.7
715,438 - 16595 mRNA_8227 0.12 0.5
715,514 - 16595 mRNA_8227 0.20 2.1
715,532 - 16595 mRNA_8227 0.22 0.5
715,552 + 16595 mRNA_8227 0.25 -0.9
715,565 + 16595 mRNA_8227 0.26 2.1
715,569 - 16595 mRNA_8227 0.27 -0.4
715,574 + 16595 mRNA_8227 0.27 0.6
715,578 - 16595 mRNA_8227 0.28 0.4
715,580 - 16595 mRNA_8227 0.28 0.4
715,584 - 16595 mRNA_8227 0.29 -0.9
715,589 + 16595 mRNA_8227 0.29 0.1
715,602 - 16595 mRNA_8227 0.31 0.4
715,605 + 16595 mRNA_8227 0.31 0.7
715,609 - 16595 mRNA_8227 0.31 0.5
715,609 + 16595 mRNA_8227 0.31 0.3
715,609 + 16595 mRNA_8227 0.31 0.8
715,611 + 16595 mRNA_8227 0.32 2.1
715,614 - 16595 mRNA_8227 0.32 -1.0
715,615 + 16595 mRNA_8227 0.32 1.6
715,615 + 16595 mRNA_8227 0.32 -0.3
715,617 + 16595 mRNA_8227 0.32 0.1
715,619 + 16595 mRNA_8227 0.33 0.5
715,621 + 16595 mRNA_8227 0.33 1.5
715,621 + 16595 mRNA_8227 0.33 -1.3
715,621 + 16595 mRNA_8227 0.33 -0.1
715,622 - 16595 mRNA_8227 0.33 0.0
715,624 + 16595 mRNA_8227 0.33 -1.0
715,634 + 16595 mRNA_8227 0.34 -0.2
715,696 + 16595 mRNA_8227 0.42 -0.7
715,699 - 16595 mRNA_8227 0.42 0.0
715,700 + 16595 mRNA_8227 0.42 1.3
715,701 + 16595 mRNA_8227 0.42 0.1
715,707 + 16595 mRNA_8227 0.43 0.7
715,708 + 16595 mRNA_8227 0.43 0.1
715,709 + 16595 mRNA_8227 0.43 1.6
715,710 - 16595 mRNA_8227 0.43 0.6
715,713 - 16595 mRNA_8227 0.44 0.4
715,725 - 16595 mRNA_8227 0.45 1.4
715,727 + 16595 mRNA_8227 0.45 0.7
715,730 + 16595 mRNA_8227 0.46 0.6
715,736 + 16595 mRNA_8227 0.46 0.8
715,791 + 16595 mRNA_8227 0.53 0.3
715,981 - 16595 mRNA_8227 0.75 -1.0
716,747 - 16596 mRNA_8228 0.17 3.1
716,750 - 16596 mRNA_8228 0.17 -2.1
717,185 + 16596 mRNA_8228 0.30 -1.8
718,521 - 16596 mRNA_8228 0.70 -3.2
718,810 - 16596 mRNA_8228 0.79 -1.3
719,217 - -0.0
719,536 - -1.4
719,644 - -0.6
719,645 - 1.6
719,647 - 0.4
719,647 - 0.4
719,669 + -0.3
719,800 + -1.3
719,939 + -0.2
719,939 + -2.1
720,213 - -0.1
720,218 - -0.1
720,236 - 0.8