Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8201

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8200: 16568 - KOG4635 Vacuolar import and degradation protein, at 658183 to 660127 16568 mRNA_8201: 16569 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 660279 to 661499 16569 mRNA_8202: 16570 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 661821 to 664157 16570

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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659,318 - 16568 mRNA_8200 0.58 0.0
659,617 - 16568 mRNA_8200 0.74 0.1
659,912 + 16568 mRNA_8200 0.89 0.8
660,317 + 1.0
660,327 - -0.0
660,470 - 16569 mRNA_8201 0.16 0.5
660,478 - 16569 mRNA_8201 0.16 1.7
660,493 - 16569 mRNA_8201 0.18 -0.6
660,494 - 16569 mRNA_8201 0.18 -0.3
660,498 + 16569 mRNA_8201 0.18 -1.6
660,501 - 16569 mRNA_8201 0.18 -0.2
660,638 + 16569 mRNA_8201 0.29 -0.1
660,641 - 16569 mRNA_8201 0.30 0.7
660,682 + 16569 mRNA_8201 0.33 2.1
660,787 + 16569 mRNA_8201 0.42 -0.8
660,803 - 16569 mRNA_8201 0.43 -0.4
660,809 - 16569 mRNA_8201 0.43 -1.6
661,257 + 16569 mRNA_8201 0.80 0.5
661,351 + 16569 mRNA_8201 0.88 0.7
661,354 - 16569 mRNA_8201 0.88 0.1
661,375 - 16569 mRNA_8201 0.90 -0.7
661,515 - 0.5
661,530 - -0.1
661,665 + 3.3
661,666 - 2.1
661,668 + -0.5
661,672 - 0.4
661,681 - 0.3
661,682 - 1.3
661,683 + 0.1
661,688 + 0.6
661,688 - 0.9
661,692 - -0.1