Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8186

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8185: 16553 - K02359 EGH egghead protein (zeste-white 4 protein), at 618810 to 622514 16553 mRNA_8186: 16554 - Hypothetical Protein, at 622930 to 623583 16554 mRNA_8187: 16555 - K10949 KDELR ER lumen protein retaining receptor, at 624425 to 625437 16555

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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623,062 + 16554 mRNA_8186 0.20 2.5
623,357 - 16554 mRNA_8186 0.65 -1.1
623,378 + 16554 mRNA_8186 0.69 -0.4
623,487 + 16554 mRNA_8186 0.85 -0.9
623,488 - 16554 mRNA_8186 0.85 0.4
623,496 - 16554 mRNA_8186 0.87 -0.3
623,498 - 16554 mRNA_8186 0.87 2.2
623,498 - 16554 mRNA_8186 0.87 0.6
623,498 - 16554 mRNA_8186 0.87 0.4
623,503 - 16554 mRNA_8186 0.88 1.9
623,528 - 0.3
623,530 + 0.4
623,540 - -0.5
623,657 + 1.4
623,669 + 0.6
623,673 - -1.3
623,675 + 0.0
623,682 + -1.3
623,682 - -1.9
623,687 + 0.0
623,689 + -1.9
623,717 + 1.2
623,807 - -0.3
623,851 - 0.7
623,853 - -0.1
623,853 - 0.3
623,857 - -0.0
623,858 + 0.7
623,858 + 0.1
623,862 + 1.0
623,867 + 1.1
623,881 + -1.6
623,954 + 1.0
623,962 - 0.2
623,975 + -2.4
623,990 + 0.3
623,992 + -0.4
623,992 - 2.0
623,998 - -1.0
624,000 - 0.8
624,004 + -2.6
624,013 + 1.0
624,016 - 0.3
624,019 + 3.4
624,025 - 1.7
624,029 - 2.3
624,160 - 0.4
624,164 + -1.6
624,165 - -0.2
624,165 - 1.6
624,170 - 1.0
624,325 + -0.8
624,327 - 1.3
624,457 + -0.0
624,463 - 1.2