Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8170

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582440 to 584866 16537 mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585766 to 587530 16538 mRNA_8171: 16539 - HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 587656 to 589364 16539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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585,562 + 2.0
585,943 + 16538 mRNA_8170 0.10 -0.1
585,985 + 16538 mRNA_8170 0.12 -0.0
585,995 - 16538 mRNA_8170 0.13 -0.3
586,162 + 16538 mRNA_8170 0.22 -0.8
586,290 + 16538 mRNA_8170 0.30 -0.9
586,307 - 16538 mRNA_8170 0.31 -0.7
586,338 - 16538 mRNA_8170 0.32 2.6
586,452 + 16538 mRNA_8170 0.39 -2.2
586,584 - 16538 mRNA_8170 0.46 2.6
586,585 + 16538 mRNA_8170 0.46 0.9
586,873 + 16538 mRNA_8170 0.63 0.6
587,056 - 16538 mRNA_8170 0.73 -0.2
587,181 + 16538 mRNA_8170 0.80 0.4
587,344 + 16538 mRNA_8170 0.89 0.4
587,478 - -0.3
587,604 + 0.4
587,618 - 1.1
587,626 + 0.1
588,177 - 16539 mRNA_8171 0.30 -2.1
588,347 + 16539 mRNA_8171 0.40 1.5