Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8145

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8144: 16512 - HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 515756 to 518130 16512 mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518265 to 522947 16513 mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523156 to 525295 16514

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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517,598 + 16512 mRNA_8144 0.78 -0.7
517,725 - 16512 mRNA_8144 0.83 0.0
517,895 + 0.7
517,898 - 1.0
517,916 - 0.2
518,049 + 1.3
518,155 + 0.2
518,196 - 1.1
519,478 - 16513 mRNA_8145 0.26 0.7
520,217 + 16513 mRNA_8145 0.42 1.9
520,243 - 16513 mRNA_8145 0.42 0.8
520,379 - 16513 mRNA_8145 0.45 -0.2
520,382 + 16513 mRNA_8145 0.45 -0.8
520,654 - 16513 mRNA_8145 0.51 0.4
520,921 + 16513 mRNA_8145 0.57 3.3
520,992 - 16513 mRNA_8145 0.58 1.2
521,264 + 16513 mRNA_8145 0.64 0.2
521,510 + 16513 mRNA_8145 0.69 -0.2
521,882 + 16513 mRNA_8145 0.77 1.3
521,979 + 16513 mRNA_8145 0.79 -0.4
522,298 + 16513 mRNA_8145 0.86 0.2
522,423 + 16513 mRNA_8145 0.89 0.2
522,714 + 0.3
522,733 - 1.7
522,972 - 1.0
522,992 + 1.0
523,005 + -0.3
523,075 - -0.0
523,160 - 1.0
523,171 - 0.8
523,307 + -0.1