Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8144

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8143: 16511 - K01515 nudF ADP-ribose pyrophosphatase, at 514530 to 515609 16511 mRNA_8144: 16512 - HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 515756 to 518130 16512 mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518265 to 522947 16513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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515,428 + 16511 mRNA_8143 0.83 0.3
515,524 + 0.0
515,565 + 0.4
515,682 - 2.7
515,750 - -0.6
515,847 - 1.7
515,848 - -0.2
515,985 - 0.3
516,007 + 16512 mRNA_8144 0.11 -0.2
516,109 + 16512 mRNA_8144 0.15 0.3
516,141 + 16512 mRNA_8144 0.16 1.4
516,150 + 16512 mRNA_8144 0.17 2.6
516,300 - 16512 mRNA_8144 0.23 -1.7
516,302 + 16512 mRNA_8144 0.23 -1.4
516,336 + 16512 mRNA_8144 0.24 -0.9
516,731 - 16512 mRNA_8144 0.41 -1.2
516,741 + 16512 mRNA_8144 0.41 0.5
516,849 - 16512 mRNA_8144 0.46 1.6
516,867 - 16512 mRNA_8144 0.47 -0.3
516,971 + 16512 mRNA_8144 0.51 0.4
517,097 + 16512 mRNA_8144 0.56 -0.3
517,598 + 16512 mRNA_8144 0.78 -0.7
517,725 - 16512 mRNA_8144 0.83 0.0
517,895 + 0.7
517,898 - 1.0
517,916 - 0.2
518,049 + 1.3
518,155 + 0.2
518,196 - 1.1