Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8130

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8129: 16497 - KOG0543 FKBP-type peptidyl-prolyl cis-trans isomerase, at 487427 to 488552 16497 mRNA_8130: 16498 - BLAST transcription factor [Pseudozyma hubeiensis SY62], at 488795 to 491438 16498 mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491877 to 495566 16499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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487,890 - 16497 mRNA_8129 0.41 -0.2
488,052 + 16497 mRNA_8129 0.56 2.2
488,191 + 16497 mRNA_8129 0.68 -0.7
488,195 - 16497 mRNA_8129 0.68 -0.3
488,274 + 16497 mRNA_8129 0.75 2.6
488,468 + 0.5
488,600 + 0.6
488,609 - -1.3
488,621 + -0.7
488,646 - 0.7
488,820 + -0.2
489,072 + 16498 mRNA_8130 0.10 0.1
489,083 + 16498 mRNA_8130 0.11 2.2
489,354 + 16498 mRNA_8130 0.21 -0.3
489,372 + 16498 mRNA_8130 0.22 3.1
489,633 - 16498 mRNA_8130 0.32 1.3
490,082 - 16498 mRNA_8130 0.49 0.3
490,486 - 16498 mRNA_8130 0.64 1.5
490,556 + 16498 mRNA_8130 0.67 1.5
490,700 + 16498 mRNA_8130 0.72 0.1
491,069 + 16498 mRNA_8130 0.86 1.1
491,304 + 0.7
491,411 - -0.9
491,559 + 0.4
491,732 - -0.3
491,740 + 1.0
491,877 - 2.9
492,218 + 0.3
492,362 + 16499 mRNA_8131 0.13 -0.5
492,380 + 16499 mRNA_8131 0.14 1.1