Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8117

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8116: 16484 - K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase, at 453564 to 454690 16484 mRNA_8117: 16485 - K06041 kdsD, kpsF arabinose-5-phosphate isomerase, at 455080 to 456482 16485 mRNA_8118: 16486 - Hypothetical Protein, at 456909 to 458986 16486

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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454,450 + 16484 mRNA_8116 0.79 -1.2
454,726 - 0.0
454,733 - 0.7
454,743 - -0.0
454,745 - 0.7
454,751 + -0.4
454,753 + 0.4
454,761 + 0.5
454,761 + -0.4
454,766 + -2.1
454,816 - 1.3
454,881 - -0.5
454,935 + 1.8
454,943 - -0.1
454,945 - -0.5
454,949 + -0.4
454,950 + 0.3
454,951 - 2.2
454,951 - -1.4
454,952 - 0.2
454,952 + 1.1
454,953 + -0.2
454,953 + 0.4
454,953 + 0.5
454,956 - 0.3
454,957 + 0.6
454,958 - 0.2
454,959 - 0.3
454,962 + 0.8
454,962 + 0.2
454,965 - 1.1
454,966 - 0.3
454,968 + 1.3
454,969 + -0.0
454,970 + 0.9
454,971 + 1.4
454,973 + -1.0
454,973 + -1.8
454,977 - -0.0
454,994 + 0.2
454,994 - -0.6
454,994 - -0.4
454,996 - 0.2
454,997 + 0.2
454,997 + -0.1
455,011 - 0.6
455,015 - 1.4
455,019 + 1.5
455,021 - 1.6
455,024 + 0.3
455,150 - 0.2
455,161 + 1.5
455,163 + 0.7
455,188 + 1.5
455,189 - -0.1
455,191 - 0.9
455,337 + 16485 mRNA_8117 0.18 1.1
455,592 + 16485 mRNA_8117 0.36 0.4
455,766 - 16485 mRNA_8117 0.49 -0.1
455,896 + 16485 mRNA_8117 0.58 1.7
455,901 + 16485 mRNA_8117 0.59 0.0
455,910 + 16485 mRNA_8117 0.59 0.5
456,205 - 16485 mRNA_8117 0.80 -0.4
456,467 + -1.7
456,639 - 0.1
456,807 - -0.0
457,275 + 16486 mRNA_8118 0.18 2.3
457,276 - 16486 mRNA_8118 0.18 1.0