Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7956

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93400 to 95869 16323 mRNA_7956: 16324 - K03146 THI4, THI1 thiamine thiazole synthase, at 96703 to 99029 16324 mRNA_7957: 16325 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 99297 to 100218 16325

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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95,841 - 0.2
95,858 - 0.8
96,009 - -0.2
96,072 - 0.0
96,083 + -1.0
96,179 + 0.9
96,285 - 0.8
96,298 + 1.7
96,473 + 2.4
96,497 + 1.2
96,513 + -0.0
96,533 - -0.2
96,538 + 3.2
96,554 - 0.6
96,567 - 0.3
96,574 + 0.2
96,580 - -0.8
96,590 - 1.1
96,605 + 2.3
96,616 + 1.6
96,631 + -1.6
96,633 - -0.3
96,641 - 0.8
96,943 - 16324 mRNA_7956 0.10 -0.6
96,963 + 16324 mRNA_7956 0.11 -0.7
97,088 + 16324 mRNA_7956 0.17 -0.1
97,234 + 16324 mRNA_7956 0.23 0.8
97,238 + 16324 mRNA_7956 0.23 -1.1
97,282 + 16324 mRNA_7956 0.25 0.7
97,877 + 16324 mRNA_7956 0.50 -0.9
98,340 + 16324 mRNA_7956 0.70 0.5
98,343 - 16324 mRNA_7956 0.70 -0.2
98,797 + 0.7
98,905 + -0.7
98,941 - 1.7
98,943 - -0.3
98,982 + -0.3
99,218 + 1.5
99,418 - 16325 mRNA_7957 0.13 -0.3
99,423 + 16325 mRNA_7957 0.14 -0.0
99,500 + 16325 mRNA_7957 0.22 0.8
99,652 - 16325 mRNA_7957 0.39 -0.7
99,858 + 16325 mRNA_7957 0.61 0.1
99,861 - 16325 mRNA_7957 0.61 0.5
99,873 + 16325 mRNA_7957 0.62 1.6