Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7951

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7950: 16318 - K04802 PCNA proliferating cell nuclear antigen, at 76989 to 79257 16318 mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79808 to 82314 16319 mRNA_7952: 16320 - KOG0627 Heat shock transcription factor, at 82566 to 84687 16320

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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79,287 + 0.7
79,343 - 0.5
79,343 - -0.2
79,348 + 1.6
79,394 - 0.2
79,400 + 0.4
79,405 - -1.1
79,409 + 1.4
79,494 + -1.4
79,679 + 0.2
79,798 + 0.1
79,925 - 1.4
79,931 + 0.1
80,080 + 16319 mRNA_7951 0.11 -0.3
80,523 + 16319 mRNA_7951 0.29 1.1
80,524 - 16319 mRNA_7951 0.29 0.5
80,912 - 16319 mRNA_7951 0.44 -1.4
80,930 - 16319 mRNA_7951 0.45 2.1
80,931 + 16319 mRNA_7951 0.45 0.9
81,061 - 16319 mRNA_7951 0.50 -0.2
81,693 + 16319 mRNA_7951 0.75 0.1
81,831 + 16319 mRNA_7951 0.81 2.3
82,009 + 16319 mRNA_7951 0.88 -0.4
82,091 + 1.8
82,124 + -0.3
82,124 + -0.0
82,228 + 0.3
82,317 - 1.7
82,547 + 1.0
82,592 - -0.0
82,721 - -1.1
83,236 - 16320 mRNA_7952 0.32 0.1
83,237 + 16320 mRNA_7952 0.32 0.6