Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7554

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547720 to 548858 15921 mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548985 to 552468 15922 mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552807 to 554579 15923

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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548,002 - 15921 mRNA_7553 0.25 1.1
548,005 - 15921 mRNA_7553 0.25 -0.7
548,006 + 15921 mRNA_7553 0.25 -1.8
548,022 + 15921 mRNA_7553 0.27 2.2
548,472 + 15921 mRNA_7553 0.66 -0.3
548,509 - 15921 mRNA_7553 0.69 1.3
548,888 - -0.1
549,301 + -0.5
549,941 - 15922 mRNA_7554 0.27 -1.7
552,162 + -1.4
552,288 + -1.3
552,296 - -1.2
552,437 - -0.9
552,495 + 1.6
552,515 + -0.3
552,879 - 0.2
552,914 + -0.0
552,914 - -1.2
553,148 + 15923 mRNA_7555 0.19 -0.3
553,193 + 15923 mRNA_7555 0.22 0.1
553,207 + 15923 mRNA_7555 0.23 0.1
553,432 - 15923 mRNA_7555 0.35 -1.3