Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7548

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7547: 15915 - Hypothetical Protein, at 534942 to 536762 15915 mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537029 to 539584 15916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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536,312 + 15915 mRNA_7547 0.75 1.4
536,336 - 15915 mRNA_7547 0.77 1.2
536,342 + 15915 mRNA_7547 0.77 1.6
536,434 - 15915 mRNA_7547 0.82 0.4
536,712 - 0.1
536,784 - -0.9
536,793 + -0.8
536,885 - 1.0
536,930 + -0.1
537,063 + -0.2
537,338 - 15916 mRNA_7548 0.12 -2.5
537,378 + 15916 mRNA_7548 0.14 -1.5
537,470 + 15916 mRNA_7548 0.17 1.6
537,957 + 15916 mRNA_7548 0.36 1.3
538,048 - 15916 mRNA_7548 0.40 0.1
538,178 - 15916 mRNA_7548 0.45 0.5
538,196 + 15916 mRNA_7548 0.46 -0.7
538,345 - 15916 mRNA_7548 0.51 -0.1
538,638 - 15916 mRNA_7548 0.63 -0.5
538,883 - 15916 mRNA_7548 0.73 0.6
539,056 + 15916 mRNA_7548 0.79 2.7
539,103 - 15916 mRNA_7548 0.81 0.8
539,109 - 15916 mRNA_7548 0.81 -0.1
539,216 + 15916 mRNA_7548 0.86 -0.3
539,243 + 15916 mRNA_7548 0.87 1.2
539,350 + -1.1
539,387 + -1.6
539,545 - 0.5
539,557 + -0.2
539,642 - 0.6
539,644 - -0.0
539,654 - 0.5
539,659 - 1.6
539,661 - 0.2
539,677 + 0.8
539,696 - 0.4
539,762 - 0.7
539,772 - 0.1
539,774 - -0.3
539,782 - -0.8
539,788 + 1.2
539,796 - 0.2
539,802 - 0.1
539,802 - -0.3
539,803 - 0.5
539,803 - 1.2
539,806 + 0.1
539,815 + 0.0
539,821 - -0.6
539,821 + -0.5
539,823 + 0.8
539,826 - -0.5
539,828 - 0.7
539,833 + 0.5
539,839 + 0.2
539,839 - -0.5
539,848 - -0.5
539,849 - 0.1
539,849 - 1.0
539,850 - 1.3
539,850 + -0.7
539,851 - 0.1
539,852 - 0.5
539,865 + 1.7
539,872 + -1.4
539,874 - 0.7
539,876 + -0.4
539,877 - -0.3
539,898 + -1.0
539,963 - -0.4
539,966 - 0.1
539,971 - 0.2
539,981 + -0.8
539,994 + -0.5
539,998 - 0.1
539,999 - 0.4
540,000 - -2.1
540,003 - 0.0
540,004 + 0.5
540,004 + -2.0
540,005 - 1.4
540,006 - 2.2
540,006 + -1.7
540,006 + -0.6
540,006 + -0.4
540,008 + -0.5
540,012 + 1.0
540,015 - 2.3
540,016 + -0.2
540,016 + 0.6
540,016 + -1.3
540,022 + 0.6
540,023 + -0.0
540,027 + -0.1
540,027 + 0.3
540,028 - -0.3
540,029 + 1.0
540,038 + -1.4
540,060 - -0.8
540,061 - -0.9
540,061 - -0.1
540,063 + -0.5
540,068 - -0.4
540,072 - -0.3
540,076 + -0.1
540,081 - 1.1
540,084 + -1.0
540,085 - -0.2
540,092 - 0.5
540,094 - 1.9
540,098 - -0.3
540,102 + -0.3
540,109 + -0.4
540,118 + -0.3
540,150 - -0.1
540,152 + 0.4
540,154 - -1.0
540,156 - 1.2
540,157 - 0.5
540,158 - 0.0
540,160 + 1.6
540,160 + 0.0
540,160 + 0.9
540,161 - 0.7
540,163 + 2.1
540,168 - -0.2
540,169 - -0.1
540,173 - 1.1
540,173 - 0.9
540,173 - 0.8
540,174 - -1.0
540,178 + 0.0
540,178 + -0.6
540,179 - 2.1
540,180 + 2.4
540,194 + 1.6
540,194 + -0.8
540,200 - 0.5
540,210 + 0.4
540,217 + 0.8
540,234 + -1.2
540,236 + 2.2
540,239 - 2.4
540,246 - 2.3
540,248 + -0.2
540,251 - -1.6
540,252 + 0.3
540,256 - 0.5
540,264 + 1.3
540,266 - -0.2
540,269 - 0.7
540,270 + 2.0
540,274 - -0.0
540,283 - -0.4
540,286 + -0.4
540,288 + -0.2
540,289 + 1.4
540,295 - -1.3
540,297 - -0.1
540,390 + 0.3
540,406 - -0.9
540,411 - -0.3
540,432 + 0.4
540,441 + 0.6
540,446 - -0.6
540,448 - -0.6
540,451 + -0.4
540,565 - 0.2
540,576 - -0.3